FMO01937.5prime Sequence
824 bp (824 high quality bases) assembled on 2008-04-28
> FMO01937.5prime
CAGTCGACATGTCTGACGAGGAGGAGGATTATATGTCCGACAAATTCCTG
GTTGGTCTGCAAGATGTCCGACCGAGTTTGGTGCACAATCGCGGCAGAAA
GCGGCAGATTGAAGTCGAGTCCAAGAAAGATGAGCTGAAGAAGCGCCAAC
GGGAGACAGCAGCTTCTTCCGGGAACGTAGACAATGTTCGCCTTCAACAG
TCCCTCAACAAACCAATTTCCGCCGACAACAAAGGATTCCAGCTACTGGC
CAAGATGGGCTACAAAGCCGGTTCTGGGTTGGGCATAACTTCGGATGCTC
GTACTGAACCCGTGGGGATAACTATAAAGAGCGGTCGTGGAGGACTTGGG
CGCGAGGCAGCCGTTGCAGAGTTGGCCCTCAAGCGGCAGAAGTTGCGGAG
GGCACATCTCCTAAACAAGGCCGGCATTAAAAGCGACGAGGAAGTCAGTA
CAGAGGCTTATAGGAGGCGCGCGACCCATAAAGCGGAGGAGCGAAAATTA
CAGTATGACATAAAACGGTGCCAGCAGACCTGCGAATCGTTGGATCTTAA
GTCCGCTATCACAGAACCAGATCTCGATTTCTTTTGGCCACCTAAACCAA
AAGATGAAGACGAATCACAGAGCGACGCCGACGATCCTGAAGTCGAGGTG
CCACCTAAGCAAGAACCATACAGTCCCTCGGAGCAATTAGAACTCCTCAC
TGGCTACCTGCGCACAGCCTATTGCTTCTGCTATTGGTGTGGGACCCATT
ACGATGACGCCGAAGATCTGGGCTCCAACTGTCCAGGACTCACTCGTGAC
GAACACGCAAGCTTTCTAGACCAT
FMO01937.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10053-RB | 982 | CG10053-RB | 161..958 | 9..806 | 3975 | 99.9 | Plus |
| CG10053-RA | 856 | CG10053-RA | 35..832 | 9..806 | 3975 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7247365..7248116 | 55..806 | 3745 | 99.9 | Plus |
| 3R | 32079331 | 3R | 7247250..7247296 | 9..55 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:17 has no hits.
FMO01937.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:45 Download gff for
FMO01937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10053-RA | 3..812 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:13 Download gff for
FMO01937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10053-RA | 28..837 | 1..813 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:20 Download gff for
FMO01937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10053-RA | 28..837 | 1..813 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:20 Download gff for
FMO01937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7247243..7247296 | 1..55 | 92 | -> | Plus |
| 3R | 7247366..7248121 | 56..813 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:13 Download gff for
FMO01937.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 3072965..3073018 | 1..55 | 92 | -> | Plus |
| arm_3R | 3073088..3073843 | 56..813 | 99 | | Plus |
