FMO01940.5prime Sequence
794 bp (794 high quality bases) assembled on 2008-04-28
> FMO01940.5prime
CAGTCGACATGCCGCGCTCCAAACGTGATAAGAAAGTTTCCCTGACCAAA
ACCGACCGCAAGGGTCTGGCTTGGAAACAGCGCATTGTGGACGACATTCG
GTTCTGCGTGGGCAAATACCCAAATATATTCGTTTTCCAAGTTCAGAACA
TGAGGAATAGCTTGCTGAAGGATCTGCGACAGGAGTTGAAAAAGAATTCT
CGTTTTATCTTTGGCAAGAATCGTGTTATGCAGATTGGCTTGGGTCGCAC
GAAGAGCGAGGAAGTGGAGCCGGAATTGCACAAGCTATCCAAGCGATTAA
CTGGCCAGGTGGGACTGCTTTTCACGGACAAATCCAAGGAGGAAGTCCTG
GAGTGGGCAGAAAACTACTGGGCCGTGGAATACGCACGCAGTGGCTTTGT
GGCCACGGAAACGGTTACCCTGCCAGCAGGTCCCCTAGAGGACTTCGCCC
ACTCTATGGAACCGCATCTGCGTTCCCTGGGCCTGCCCACCAAATTGGAG
AAGGGAATCGTTACGCTGTACAGTGACTACACGGTTTGTGAGGAGGGCAA
AGTTCTAACACCCGAACAGGCGAGAATCCTCAAGCTGGTGGGCAAGCCCA
TGGCCAAATTTCGGCTGACCATGAAGTGCTCGTGGACAAAAAGCGAAGGC
TTCCAGCTGCATGTCGAGGATGATGTGAACGACGAGGAACAGGCTGATAG
CGCAATGGAAGAGGAGGCCGAGGCCGAGGCCATGGATGACAACGACGACG
ATGATGACGAAGAGGAGGATGATGAAGCAAGCTTTCTAGACCAT
FMO01940.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpLP0-like-RA | 948 | CG1381-RA | 105..872 | 9..776 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10098594..10099087 | 776..283 | 2470 | 100 | Minus |
| 2R | 25286936 | 2R | 10099146..10099395 | 284..35 | 1250 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:34:32 has no hits.
FMO01940.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:47 Download gff for
FMO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1381-RA | 96..871 | 1..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:46 Download gff for
FMO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-like-RA | 100..875 | 1..780 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:23 Download gff for
FMO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpLP0-like-RA | 100..875 | 1..780 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:23 Download gff for
FMO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10098590..10099085 | 285..780 | 99 | <- | Minus |
| 2R | 10099146..10099393 | 37..284 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:46 Download gff for
FMO01940.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5986095..5986590 | 285..780 | 99 | <- | Minus |
| arm_2R | 5986651..5986898 | 37..284 | 100 | <- | Minus |
