FMO01945.5prime Sequence
683 bp (683 high quality bases) assembled on 2008-04-28
> FMO01945.5prime
CAGTCGACATGGACTTCTTGTTCGGTTCCCGTTCCAGCAAGACCTTCAAG
CCCAAGAAGAACATCCCGGAAGGCACACACCAATATGATCTCATGAAGCA
TGCGGCAGCCACGCTGGGATCGGGAAACCTGCGCAATGCAGTGGCCCTTC
CAGATGGCGAGGATCTCAACGAGTGGGTGGCCGTTAACACCGTGGACTTT
TTCAACCAGATCAACATGCTGTACGGCACCATCACCGAGTTCTGCACCGA
GGAGACCTGTGGCATCATGTCGGCTGGTCCGAAATACGAGTACCACTGGG
CCGACGGTTTGACCGTAAAGAAGCCCATCAAGTGCAGCGCGCCCAAGTAT
ATTGACTATCTGATGACTTGGGTGCAGGATCAGCTGGACGACGAGACCCT
GTTTCCCTCCAAGATCGGCGTGCCGTTTCCAAAGAACTTTCACTCCTCCG
CCAAGACCATACTGAAGCGTCTGTTCCGCGTGTATGCGCACATCTACCAC
CAGCACTTCACAGAGGTGGTGACGCTTGGCGAGGAGGCCCATCTCAACAC
GTCCTTCAAGCACTTCATCTTCTTCGTGCAGGAGTTCAATCTGATTGAGC
GGCGCGAACTGGCCCCGCTGCAGGAGCTCATCGACAAGCTGACGGCTAAG
GATGAGCGGCAGATAGCAAGCTTTCTAGACCAT
FMO01945.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mats-RC | 1096 | CG13852-RC | 264..921 | 8..665 | 3290 | 100 | Plus |
| mats-RB | 1716 | CG13852-RB | 428..1085 | 8..665 | 3290 | 100 | Plus |
| mats-RA | 1260 | CG13852-RA | 428..1085 | 8..665 | 3290 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 22422196..22422671 | 190..665 | 2380 | 100 | Plus |
| 3R | 32079331 | 3R | 22421968..22422134 | 23..189 | 835 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:49 has no hits.
FMO01945.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:54 Download gff for
FMO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13852-RA | 429..1091 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:19 Download gff for
FMO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mats-RA | 423..1085 | 1..665 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:41 Download gff for
FMO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mats-RA | 423..1085 | 1..665 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:41 Download gff for
FMO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 22421968..22422134 | 23..189 | 100 | -> | Plus |
| 3R | 22422196..22422671 | 190..665 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:19 Download gff for
FMO01945.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 18247690..18247856 | 23..189 | 100 | -> | Plus |
| arm_3R | 18247918..18248393 | 190..665 | 100 | | Plus |
