FMO01947.5prime Sequence
1227 bp (1021 high quality bases) assembled on 2008-04-28
> FMO01947.5prime
CAGTCGACATGCCACCGCGGTTGCCGTTCGGACAAGTCAGAAACTTATTG
ATTCAGGGACACATAATTCGAAGGATGAGCTCCCAACACAAGGTGTACGT
AACCAGGCCGGATGTGGATGACAGCGGTCTGGAGCTGCTGCGCAAGAGCT
GCCAAGTGAGTACCTGGCATGAGACCAATCCGGTGCCCCGCTCCGAGCTT
ATCCGCGTCGTGGCCGGAAAAGATGCCCTTTACTGCGCTCTAACGGACAA
GGTTGACAAGGAAGTCTTGGATGCTGCCGGTCCTCAGTTGAAGTGCGTGG
CAACTATTTCGGTGGGTTACGATCACATCGACGTGGAGGAGTGCAGGAAA
CGTGGAATTCGAGTGGGCTTCACACCGGACGTCCTAACGGATGCCACGGC
AGAATTAACGCTTGCCCTGCTTCTGGCCACCAACCGCCGACTATTCGAGG
CCAACAAGCAGGTTTACAACGGCGGCTGGAAGTCGTGGGCCCCCATGTGG
ATGTGCGGCCAGGGACTGAAGGGCTCCCGGGTCGGCCTGCTGGGCTTCGG
CCGCATCGGCCAAGAGATAGCGGCACGCATTGTGCCATTTAAGCCGACGG
AGATAACATACACAACACGATCACTGCGCCCCAAGGAGGCGGCTGCTGTG
AATGCCCGGCACGTGGACTTTGACGAGATGCTTCGCGAGTCGGACTTAAT
CGTAGTCTGTTGCGCCCTAACCCCGGAGACTAAGAAATCTTCAATGCCAC
TGCCTTTCAGAAGATGAAGCCCAACTGCATTCTTATCAACACGGCGCGTG
GTGGCGTTGTAGACCAGAAGGCCCTGTACGAGGCACTGAAAACCAAACGA
ATTCTAGCAGCTGGTCTGGATGTAACGACGCCGGAGCCATTGCCAATCGA
CGATCCTCTTCTGAAACTGGATATGTGTTATTCTCCCCACATTGCAGCGC
TGACATCGAACGCGCAAGGAAATGTCCCGGATTACAGCAGAAATATTCTG
CTGCCTTAGCTGCGATAAATGGTAGCCGAAGTAGAGCTGCAGCTTCTAGA
CATCGTTTGGCGCGCGGCCCAGTAAATGGTCATAATCTAATCATATCATA
ATCATATCACACTAGGCTAGGGAATTCCTGGCTAACTGTGCCCTGAATTC
CACATAAGCTCCGGCGGCACTGAGCGTCTGGACACAAATCCTAATGTGAA
AGTCGTGAGTCATTCATCCTTGGGAGT
FMO01947.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1236-RA | 1190 | CG1236-RA | 42..1082 | 9..1039 | 4955 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5737003..5737905 | 147..1039 | 4015 | 98.9 | Plus |
| 3R | 32079331 | 3R | 5736789..5736928 | 9..148 | 700 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:22 has no hits.
FMO01947.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:57 Download gff for
FMO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1236-RA | 40..1086 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:15 Download gff for
FMO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1236-RA | 36..1082 | 1..1039 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:24 Download gff for
FMO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1236-RA | 36..1082 | 1..1039 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:24 Download gff for
FMO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5736783..5736928 | 1..148 | 97 | -> | Plus |
| 3R | 5737005..5737918 | 149..1052 | 98 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:15 Download gff for
FMO01947.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1562505..1562650 | 1..148 | 97 | -> | Plus |
| arm_3R | 1562727..1563640 | 149..1052 | 98 | <- | Plus |
