FMO01948.5prime Sequence
764 bp (764 high quality bases) assembled on 2008-04-28
> FMO01948.5prime
CAGTCGACATGGCTTCTGCTACCCAATTGACCCACAGAGGTATCCATTTG
GCCGGACTGTACAGATCTTCTTGGTCTAAGCCCTTGTTCCGACATTTGGC
AACAAAGCCTATACTGTATTCCTATTGGCCTAGTTCGTGTTCTTGGAGAG
TTCGCGTTGCGCTGGCAATAAAGAAGATTGATTATGACATTAAGCCGACT
TCTTTGCTAAAAACAGTTAGCGGACATGCCTATACGGATGAATATAGGGA
AGTCAATCCGATGCAAAAGGTTCCCTCGTTGAAGATTGATGGCCATACCT
TGTGCGACTCGGTGGCTATTATCCACTACCTGGAGGAAACTCGACCTCAG
CCAGCACTTCTGCCCCAGGATCCGGTTAAAAGAGCAAAGATCCGTGAAAT
TGTGGAGCTCATTTGCTCGGGCATCCAGCCACTGCAAAATGTATCTGTCC
TAGATCATATAGGCAAGGATCAGAGTCTGCAATGGGCACAACACTGGATT
TCTCGAGGATTTCAGGGTCTCGAAAAGGTTCTTTCCCATTCGGCGGGCAA
ATTCTGTGTGGGAGATGAGCTCAGCATGGCTGATATTTGCCTGGTACCTC
AGGTGCGCAATGCCAGGAGATACAAAGCTGACCTGACCCCATATCCCACC
ATAGTACGCTTGAATCAGGAACTACAAGAACTTGATGTCTTCAAAGCCAC
TCATCCCAGTACCCAGCCAGATTGTCCACCTGAATTCGCAAAAAAAGCAA
GCTTTCTAGACCAT
FMO01948.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:43:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| GstZ1-RA | 913 | CG9362-RA | 102..839 | 9..746 | 3675 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:43:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9455781..9456112 | 619..288 | 1645 | 99.7 | Minus |
| 3R | 32079331 | 3R | 9456166..9456445 | 288..9 | 1400 | 100 | Minus |
| 3R | 32079331 | 3R | 9455591..9455719 | 746..618 | 645 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:43:48 has no hits.
FMO01948.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:59:59 Download gff for
FMO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9362-RA | 93..838 | 1..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:55:54 Download gff for
FMO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ1-RA | 97..842 | 1..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:19 Download gff for
FMO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| GstZ1-RA | 97..842 | 1..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:19 Download gff for
FMO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9455588..9455717 | 620..750 | 98 | <- | Minus |
| 3R | 9455781..9456111 | 289..619 | 99 | <- | Minus |
| 3R | 9456166..9456450 | 1..288 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:55:54 Download gff for
FMO01948.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5281310..5281439 | 620..750 | 98 | <- | Minus |
| arm_3R | 5281503..5281833 | 289..619 | 99 | <- | Minus |
| arm_3R | 5281888..5282172 | 1..288 | 98 | | Minus |
