FMO01949.5prime Sequence
926 bp (926 high quality bases) assembled on 2008-04-28
> FMO01949.5prime
CAGTCGACATGGATTTGGAGAACAACAACAATACGCCATTGACCGGCAAA
CAAGCCGAAAAATGTGCGAAAAAGCGAAAATGTGTAATAACATTAGATGA
AAAGCAAGTGGAATCCAAAAGACTGAAAAAGGAGGAATCAAATGTGGAGG
CCACAAGCCGTCCGCCTGCGCAGAGTCCCAAAAAACGGCTCCATCTAAAC
GGAAAGCCCATGCAAAACAAGGACCTTAACTTCAAGTACGGCAACTATAA
GCACTACTACGGCAAGCGCATCCTGAACAAGGATTTTCACGACATACGCC
TGGACGTGCTTGGCACGCAACCGGATTTGTTTCGGAACAAGCAGCTGCTT
GACATCGGCTGCAACTCTGGCCACCTGTCCATCCAGATTGCCAGGAAATT
CGAGGTTAAGAGCCTCGTGGGCCTGGACATAGATCGGGGGCTAATAAATG
ATGCCCAAAAAACCGTCAGTCACCTGAAACGTCACGCAACCCCGGGGCAG
GGGATACCCCACATACAGTTTGTGCACGGGAACTACGTCCTGGAGGACGA
CGTCCTGCTCGAAATTGAACGGCCGCAGTTCGACGTCATACTCTGCCTGT
CTGTCACTAAGTGGATCCACCTTAATTTCTGTGATTCCGGCCTGAAGCAG
GCCTTCAGACGCATGTACCTGCAGCTGCGCCCGGGCGGCAAGCTGATCCT
GGAACCTCAGTCCTTCGACGGCTACAAGAGGCGCAAGAAGCTATCGGAAC
AAATAAGAGATAACTACAATGCAATTAAATTCCGACCTGATCATTTCACC
GAATATCTGCTTAGCCCGGAAGTGGGCTTTGCCGAAATGAAACTTATGGG
CATACCGGAGCACTGCAAAGTAGGATTCAAGCGACCGATCCAAATTTTTA
CAAAGTCGGCAAGCTTTCTAGACCAT
FMO01949.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1239-RC | 1052 | CG1239-RC | 114..1013 | 9..908 | 4500 | 100 | Plus |
| CG1239-RB | 1058 | CG1239-RB | 120..1019 | 9..908 | 4500 | 100 | Plus |
| CG1239-RA | 1051 | CG1239-RA | 113..1012 | 9..908 | 4500 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5733695..5734433 | 9..747 | 3695 | 100 | Plus |
| 3R | 32079331 | 3R | 5734501..5734663 | 746..908 | 815 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:51 has no hits.
FMO01949.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:00 Download gff for
FMO01949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-RA | 81..984 | 1..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:35 Download gff for
FMO01949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-RA | 109..1012 | 1..908 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:17 Download gff for
FMO01949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1239-RA | 109..1012 | 1..908 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:17 Download gff for
FMO01949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5733691..5734432 | 1..746 | 99 | -> | Plus |
| 3R | 5734502..5734663 | 747..908 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:35 Download gff for
FMO01949.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1559413..1560154 | 1..746 | 99 | -> | Plus |
| arm_3R | 1560224..1560385 | 747..908 | 100 | | Plus |
