FMO01951.5prime Sequence
632 bp (632 high quality bases) assembled on 2008-04-28
> FMO01951.5prime
CAGTCGACATGAAGTACGCTGTGATTGCCATCGCTTTGTTTGCGATTACT
ACCGCTTCGGCCTCTTCCGCTGGCCAGTTTCTGCCCCGTGCCTTCTTCAC
CTTGGACTCGGAGGGCCACCAGTCGAATGTCCATCCCGTGAATGCCCATC
TCCTGAGGCGTCTGCGTCGTCAGTCCAGTTCGTCTTCCTCGTCATCATCC
TCCTCGTCCTCCAGTGGAGGAAACGTCTTCACCTACGCCTCACACAGCGT
TCAGAATGCCGATGGCTCCGGTCATTCTGGCTCCTCTTACACCCAGCAGG
CCGCTGCTCCAGTGCTTGGTGGTGTGTCCTTTGATGAGCGTTTCGGCGAG
AGCTCCTTAACTGGAGGCGACAACTATTATCCCACCTACAATGGCTACAC
CAGCGCAGCCTCCATCAGCAGCAACAGCGGAGTAGGAAGCACCGGTAGCT
ATCAGCACATCTCCGGAGTTGGACCCATTCCCGCCACCCAAATCCAGCAG
ACCGTGGCCGTTGTCGATGCCAGTGGCAACCAGAAGGTGACCAACATCCA
GGGTGCCACCGATTCCAACGGCGTTCTCAATATCAAGAAGACCGAATCCA
CTTACTCATCCAAAGCAAGCTTTCTAGACCAT
FMO01951.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| hui-RA | 821 | CG10200-RA | 165..770 | 9..614 | 3030 | 100 | Plus |
| hui-RB | 734 | CG10200-RB | 78..683 | 9..614 | 3030 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14809585..14809880 | 319..614 | 1480 | 100 | Plus |
| 2R | 25286936 | 2R | 14809273..14809523 | 69..319 | 1255 | 100 | Plus |
| 2R | 25286936 | 2R | 14808583..14808643 | 9..69 | 305 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:34:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 121..169 | 382..430 | 119 | 71.4 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9151..9199 | 382..430 | 119 | 71.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6763..6824 | 367..428 | 111 | 68.3 | Plus |
| Dbuz\Osvaldo | 9045 | Dbuz\Osvaldo DBU133521 9045bp Derived from AJ133521 (Rel. 60, Last updated, Version 2). | 2169..2269 | 220..113 | 108 | 61.1 | Minus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2325..2403 | 383..461 | 106 | 62.5 | Plus |
FMO01951.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:03 Download gff for
FMO01951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10200-RA | 128..740 | 1..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:48 Download gff for
FMO01951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10200-RB | 71..683 | 1..614 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:26 Download gff for
FMO01951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| hui-RB | 71..683 | 1..614 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:26 Download gff for
FMO01951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14808576..14808643 | 1..69 | 94 | -> | Plus |
| 2R | 14809274..14809523 | 70..319 | 100 | -> | Plus |
| 2R | 14809586..14809880 | 320..614 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:48 Download gff for
FMO01951.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10696081..10696148 | 1..69 | 94 | -> | Plus |
| arm_2R | 10696779..10697028 | 70..319 | 100 | -> | Plus |
| arm_2R | 10697091..10697385 | 320..614 | 100 | | Plus |
