FMO01954.5prime Sequence
986 bp (986 high quality bases) assembled on 2008-04-28
> FMO01954.5prime
CAGTCGACATGTTTAAGCCACAATATCACTTGGCCGCAGTGCTGCTGTGT
TTCGTCTTCACCACAGCGCAGGTTGTGCCAAATGCAGAAATCGGTCGGAT
TACTATCCAAGTGCCGTTGCTGTCCAATGGAAAGCCCGTGATCCTGACCA
ACCAGGAACGGGAAGAGATCGCCACCGTGCAGGAGATCAAGCCGGGAAAG
GTCCATGTTGTCCAGGAGGTAGTGGTGCCACCTACTGTGAAGTCTGATAA
TAAGGTGCGGGTGACAAGATCAGTTTCGGATTCTGGTATCCCTAACCATG
GAATCCCAAATCCTGGCATCCCTAACCATGGAATACCGAATCGTGGAATT
CCTAATGATGGAATCCCAAATCCTGGCATTCCTAATCATGGAATTCCAAA
TCCTGGAATCCCTAATCATGGAATTCCAAACCGTGGCATTCCTAATGATG
GAATCCCGAATCCTGGCATTCCCAATCACGGTATTCCCAACCCTGGAATC
CCTAATCATGGAATTCCAAACCGCGGCATTCCTAATGATGGAATCCCTAA
CCCTGGCATCCCCAACCATGGAATCCCCAATCCTGGCATACCCAATCCCG
ATGCTTCCGAACTTAAACCAGTTGTTGTAATGCCCAGCAGTCGTACCACC
AGCGCACCCGCATCTACATCAATGCCCAAGCGAGTACCCACCAGAAATTG
TTTCCATCTTCTGATGGGTGGCACGACCACTACGTCGCCAGTGGATATGA
TGACACCACCATCTATGGAAAACTGCGATGAGCTATGCACCAAGTTCGAG
TACTCGCCCATTTGTGCCCACAATGGAATCTGCATCCATGAGTTTGCAAA
TCAGTGCGTAATGAACACCTTCAACTGCAAACACCGCGATTTGTCGTTCC
GTGCAGTGGATGAGATGTGTGCCGACTGGAGTTTGCATGAGCGATGCAAG
GAGGAGGAACTGGCGCTAGCAAGCTTTCTAAGACAT
FMO01954.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7924-RA | 1079 | CG7924-RA | 19..981 | 9..968 | 4740 | 99.7 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..517 | 373..597 | 705 | 87.6 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 383..607 | 283..507 | 705 | 87.6 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..575 | 313..595 | 605 | 80.9 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 323..605 | 283..565 | 605 | 80.9 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 294..546 | 344..596 | 545 | 81 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 354..606 | 284..536 | 545 | 81 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..487 | 403..597 | 450 | 82.1 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 413..607 | 283..477 | 450 | 82.1 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 294..456 | 434..596 | 320 | 79.8 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 444..606 | 284..446 | 320 | 79.8 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..427 | 463..597 | 285 | 80.7 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 473..607 | 283..417 | 285 | 80.7 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 293..397 | 493..597 | 210 | 80 | Plus |
| CG7924-RA | 1079 | CG7924-RA | 503..607 | 283..387 | 210 | 80 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14233577..14234511 | 37..968 | 4525 | 99.7 | Plus |
| 3L | 28110227 | 3L | 14233823..14234047 | 373..597 | 705 | 87.6 | Plus |
| 3L | 28110227 | 3L | 14233913..14234137 | 283..507 | 705 | 87.6 | Plus |
| 3L | 28110227 | 3L | 14233823..14234105 | 313..595 | 605 | 80.9 | Plus |
| 3L | 28110227 | 3L | 14233853..14234135 | 283..565 | 605 | 80.9 | Plus |
| 3L | 28110227 | 3L | 14233824..14234076 | 344..596 | 545 | 81 | Plus |
| 3L | 28110227 | 3L | 14233884..14234136 | 284..536 | 545 | 81 | Plus |
| 3L | 28110227 | 3L | 14233823..14234017 | 403..597 | 450 | 82.1 | Plus |
| 3L | 28110227 | 3L | 14233943..14234137 | 283..477 | 450 | 82.1 | Plus |
| 3L | 28110227 | 3L | 14233824..14233986 | 434..596 | 320 | 79.8 | Plus |
| 3L | 28110227 | 3L | 14233974..14234136 | 284..446 | 320 | 79.8 | Plus |
| 3L | 28110227 | 3L | 14234003..14234137 | 283..417 | 285 | 80.7 | Plus |
| 3L | 28110227 | 3L | 14233823..14233957 | 463..597 | 285 | 80.7 | Plus |
| 3L | 28110227 | 3L | 14234033..14234137 | 283..387 | 210 | 80 | Plus |
| 3L | 28110227 | 3L | 14233823..14233927 | 493..597 | 210 | 80 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:27 has no hits.
FMO01954.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:06 Download gff for
FMO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7924-RA | 15..984 | 1..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:17 Download gff for
FMO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7924-RA | 15..984 | 1..972 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:28 Download gff for
FMO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7924-RA | 15..984 | 1..972 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:28 Download gff for
FMO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14233580..14234514 | 40..972 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:17 Download gff for
FMO01954.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14226680..14227614 | 40..972 | 99 | | Plus |
