FMO01955.5prime Sequence
1201 bp (1039 high quality bases) assembled on 2008-04-28
> FMO01955.5prime
CAGTCGACATGAAGACTATTTTGGTTTTAGCCATCCTGTCGCTGGCGCAA
GCCGCCGAGTTGACTCAGACTACGGAAGCCGCAACTACAGCCACAACGGG
GAAACCACAGCAAACGGAGCTCCCCATTCACATCCAGAACCTGATAACCA
GCCACATCAATCATGTACTCCAGCACATAAAGAACAAACCTCAGGTTTCG
AACACATTGAGTGGACCTGTGGATTGGCATGGGAGTGGGAGTGGGAGTGA
GGGCGGTGCGCCAGTGGTCAAGCCCCATCCAGATCTCCTTCCACCATTGG
CACACTCTGGTGATGTCCTTGCCCCTCCCCTTGCCGACGTCCCAGCGGCT
GCACCTGCGTTGCAATCTGGCATACAGTCGGTGCAAGCTGGCAATCCACC
GGTGAAGGTGACCCATCACCAGGCCACCGGTACTCTGATCCACCACGGAA
GGCCGGTGGTGCAGAATAAGGTGGTGATGCCGCCCGTGGAGCATGTGGTG
CTCTCGCTTCCTGGTCAAGAACCCATTAATGTGGCCGAAAAGCTGCAAAA
ACTTCAACAGCATGTGACCAAGGTGATGCAGCAGGCCGAGAAACACATTC
CATTAGCAGTGAACCAGGCCATTAAACAAAAGAAAGAACAGGAAGCTCAA
AGAGAAAAGGAGCAGCTCCAGAAGGATAAAGAAATCAACAAGGTTGATGA
CAAAGAAAAGGAAGTAAAAGAAGATCAGGAGGATCCTGAACCATCCGAAA
CAACACCCCAACCAAGTTCATCGAAAGCTGGTCGCTCGCTGGTTATTCCC
GATAAAGTGTCCAATATAGTCAACCAAGTTCACGCCCACATTCCCCAACT
GATTGCCCAGCATCGTGAGGAAATGAAATTGGGAAAATGCAATTTTCAGT
GTCCCAAAGCATCACTGTCCATTTGTGCCAGCAACGGCAAATGTGTGTTC
ATTTTCCAGGCCAATGTGAGCTGAGTCAGTGACTGCTCAACACCAGATGT
TTCCACAGTGCACGATGCCGATGCCAATACATTACTGCTATAAAGGAATG
ATGCAGCTTTCTAGAACATCGTTTGGCGGCCGGCCAGTATGGTCATATCT
AATCTATCTATCTATTCACACTAGCTAGGGAATCTGCATGACAGCTTGGA
TCCACAATAAAGGCCGGCCACCAGAGCTCCGTAACTAATCTAAGATGAAG
G
FMO01955.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7906-RA | 1233 | CG7906-RA | 43..1094 | 7..1044 | 4910 | 98.5 | Plus |
| CG7906-RB | 1351 | CG7906-RB | 132..1189 | 7..1044 | 4850 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 14237018..14237972 | 28..981 | 4695 | 99.7 | Plus |
Blast to na_te.dros performed 2014-11-28 20:18:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| McClintock | 6450 | McClintock McCLINTOCK 6450bp | 759..862 | 624..727 | 123 | 60 | Plus |
FMO01955.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:07 Download gff for
FMO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7906-RA | 38..1094 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:19 Download gff for
FMO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7906-RA | 38..1094 | 1..1044 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:30 Download gff for
FMO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7906-RA | 38..1094 | 1..1044 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:30 Download gff for
FMO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 14237021..14237972 | 31..981 | 99 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:19 Download gff for
FMO01955.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 14230121..14231072 | 31..981 | 99 | == | Plus |
