FMO01958.5prime Sequence
1196 bp (482 high quality bases) assembled on 2008-04-28
> FMO01958.5prime
CAATCGACATGCATCGATTGGTGGTCATATTCAGTTTCTGCCTGCTTTTG
GTCGCAGGACAATCGGTCGTGGAGCCCCAGGAGCTCTCCGATAGCACCAC
CACTTACATTGTCGATGGCTTTCCAGATGAATCTCAAGAGCTACCCGGCA
TAGTTGCGGAGACCGATGAGGAGATTGAAATGAATGCGCACAAGATCAAC
TGGCTGCCCGTTTGGGAGGAGCAGGAGCATGTACGATTCGCACGGGAAGT
GACCGAAAAGCCAGTTGGCACCGCAGCCACTGCCGAGAACTCCACGCCCA
AAGACACGTTGGATCTCGTCCTGCAGCCCAAGGAGAACAAGGAGTGCCCC
ACCAATGCTGAGCGTGGACTCACCAACCTCGTCCGCGTAGCTCGCCCACT
TTTGCCTGCTGCCACACTGAAGAACATCCTGGCGAATGGCGTTGAGGATC
CCCAGGTTCAAGAGTTGATCAAGTTGCTCCGCAGCGATAACTTCAAAACG
CAAGTGCAGCTGCTGAAGGCCACCAAGCAGCACCAGCTGCTCCATGACTA
TGTCTGTCGGCGACTTAAATTGGATCCCACTTACTACGCGGAGTACGTGC
GCGTGTTCCTCGACCTACACATTTCCGACCCACCGACCATTAAGTTGCCC
AACCGTCGCCCGGGTGTCCGCGGATTGCTCCAGGATCTCCGTGAAGCCTT
GCCCCGTACCGCCTTGAGGAATATGTACCAGCAACTCTACTCCTCCGACT
CGGAGCTCTCGAGCGCCATTCGCCTGATCCGCGGCTCGGAATTCCGGCGG
CTGCTGCGCGATCTGCGTCAACTTAAGGAGTACCGCTCCCTGCCCGCCGA
TCTGGAAAAGTCTGGTGTTCCTCTGCGCCAGCTGCAGCAACTGGTGGCTA
ACGCCCTTGGTTGTAGCACCGTGACATGGCCAGAGAGACGTCATCTGGAG
TCTTGCAAGACTTTCTAGACTATTCGTTTGGCGCGCGGACCCAGGTAGTG
GTCATAATCGTATCATCTCATAATCATTATTCCACTAGACTAGGAGATCT
GACATGACTAGGCTGGATTCCACAGTAAAACGCCGCGCACCTGACGTCTG
ACATTCGATGGATTCGAGGCCTTCTAACTATCATGGATCACGGACTGAAT
GCAGTAGCGCCTGCATGGACCTACATGCAGAACAGGGTGTGAGTAC
FMO01958.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9021-RB | 1382 | CG9021-RB | 29..976 | 9..954 | 4630 | 99.4 | Plus |
| CG9021-RA | 1201 | CG9021-RA | 29..976 | 9..954 | 4630 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5903584..5904463 | 954..77 | 4240 | 99.3 | Minus |
| 2L | 23513712 | 2L | 5904589..5904661 | 81..9 | 365 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:52:28 has no hits.
FMO01958.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:10 Download gff for
FMO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 10..961 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:55 Download gff for
FMO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 10..961 | 1..954 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:28 Download gff for
FMO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9021-RA | 25..976 | 1..954 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:28 Download gff for
FMO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5903584..5904459 | 81..954 | 99 | <- | Minus |
| 2L | 5904590..5904665 | 1..80 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:55 Download gff for
FMO01958.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5903584..5904459 | 81..954 | 99 | <- | Minus |
| arm_2L | 5904590..5904665 | 1..80 | 95 | | Minus |
