FMO01959.5prime Sequence
521 bp (521 high quality bases) assembled on 2008-04-28
> FMO01959.5prime
CAGTCGACATGGTATTCATAACGAAATTCGCAAGGATTGGGCTGCAGGCC
GCCCGCCAGCTTAGTGTCACGCCCCTTGGCGCCGTCCAGGCTCGCGCCAT
TCACCTGACAAGCCTTCTAGCCAAAGAACGCCGATACACAAACAAACACG
AGTGGGTGGAGGTGGTATCCGGCAGCAATGCCATAGTAGGCATCTCCAGC
TACGCCCAGGAGGCTCTCGGGGATGTGGTGTTCGCCCAACTCCCAGAACC
CGGCACGGAACTCAAGCAGGATGACGAATGTGGGGCCCTGGAGAGCGTTA
AAGCGGCTAGCGAGGTGTATTCACCCGTTAGTGGCAAGGTAATTGAAAAG
AATGCCGAGGTGGAGGACACACCGGCCCTAGTCAACAGCAGTTGCTATGA
GAAGGGCTGGCTTTTCAAGGTGGACCTGAAGAATCCCAAGGAACTCGAAG
CCCTTATGACCGAGGATCAGTACAAAGCCTTCCTGAGCAGCAGTGGGGAT
CACGCAAGCTTTCTAGACCAT
FMO01959.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ppl-RA | 900 | CG7758-RA | 205..699 | 9..503 | 2475 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 21280850..21281131 | 406..125 | 1410 | 100 | Minus |
| 3L | 28110227 | 3L | 21281185..21281302 | 126..9 | 590 | 100 | Minus |
| 3L | 28110227 | 3L | 21280692..21280790 | 503..405 | 495 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:57:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 2135..2182 | 102..149 | 105 | 68.8 | Plus |
| TART-A | 13424 | TART-A 13424bp | 2702..2749 | 102..149 | 105 | 68.8 | Plus |
| TART-C | 11124 | TART-C TARTC 11124bp | 1379..1426 | 102..149 | 105 | 68.8 | Plus |
FMO01959.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:11 Download gff for
FMO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7758-RA | 200..694 | 9..503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:49 Download gff for
FMO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppl-RA | 205..699 | 9..503 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:37:57 Download gff for
FMO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ppl-RA | 205..699 | 9..503 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:37:57 Download gff for
FMO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 21280692..21280789 | 406..503 | 100 | <- | Minus |
| 3L | 21280851..21281129 | 127..405 | 100 | <- | Minus |
| 3L | 21281185..21281302 | 9..126 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:49 Download gff for
FMO01959.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 21273792..21273889 | 406..503 | 100 | <- | Minus |
| arm_3L | 21273951..21274229 | 127..405 | 100 | <- | Minus |
| arm_3L | 21274285..21274402 | 9..126 | 100 | | Minus |
