FMO01960.5prime Sequence
953 bp (953 high quality bases) assembled on 2008-04-28
> FMO01960.5prime
CAGTCGACATGCGTTTCCTGGTAGTCTTAGCCTGCCTGGTGGCCGTTTGT
GCCGCCGGCACTCTGCCCAACGAGGTGGAGCAGCGTCTGTTGGAGCTGGC
GGATCAGAATGGTGACATCGATCTGGTCGCGGAGCCCCAGGAGGGAGTTG
AAGTTGCCCCCCAGTTTATTGTGTCCTGGCAGGCGCGTCGCTTCATCCGC
AAGCTCCAGAAGCAGATGGAGTGCGGATGGCCCCAGTATGGCATTCCCGT
GCTGGCTCCTCTTCGCATCAACGAATTCGACCTAGACTACAAAAAGGGCA
TTTTCGAGACCTTGAACCATGTGTTCCGCCTGAAGATCGCCGGTCTGAAT
GACTTCAATATCCAGAAGTTCAAGCTGAACGTGATCACCAGCAAGATTAC
CTTCGATTTTCTGTTCAAGAACATCGATACCACCGCCCAGAAGTACGACA
CTGATACGCTGATCGATGCCCTGCGCCAGTTGGGTCTGTCCGTGGAGTAC
GAGGGATCCGGAGAGCTGTTGTTCGATTTGGTCAACCTGCGTATTGCTGG
CACTCTGAAGTACAAGCTTCCCATGCTGTGGGGTTCCGCCAAGATCACCT
CGCTGAAGACCACCATCTCGTTGGAGTCTGTGACTTCGGACATCACTGGA
TTCATGGGCAACGGCAAGATCAACCGCGCCATCAACAGCCAGCTGGAGAA
CATCGTGGTAAAAGGGAATCAATGGCAACCAGGACGCCATTTCCGAGACC
ATTGAGAACGCCATCGTGCCGCGAGTGAACAAGATGCTGAAGGGCATGGA
CTTCTGGACCGTCGTGGACCTGATCCTGGCCAGCAGCGACTGTGAGAGCG
AGGACGATCCGATTGTCGTTGATTGCGATCCCTCCGCCGATCCCTGGGCC
GCAAGCTTTTCTATGACCATTCGTTGGAGCGCGGGCCCAGTGTAAGTGGT
CAT
FMO01960.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7953-RB | 1154 | CG7953-RB | 37..928 | 8..900 | 4410 | 99.7 | Plus |
| CG7953-RA | 1092 | CG7953-RA | 37..928 | 8..900 | 4410 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13848250..13848997 | 152..900 | 3665 | 99.6 | Plus |
| 2L | 23513712 | 2L | 13847961..13848106 | 8..153 | 730 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:52:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dbif\P-element_M | 2935 | Dbif\P-element_M P_M 2935bp Derived from X60990. | 1518..1551 | 102..66 | 115 | 83.8 | Minus |
FMO01960.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:12 Download gff for
FMO01960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7953-RA | 11..916 | 1..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:52:58 Download gff for
FMO01960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7953-RA | 29..934 | 1..907 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:38 Download gff for
FMO01960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7953-RA | 29..934 | 1..907 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:38 Download gff for
FMO01960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13847953..13848106 | 1..153 | 98 | -> | Plus |
| 2L | 13848252..13849003 | 154..907 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:52:58 Download gff for
FMO01960.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13847953..13848106 | 1..153 | 98 | -> | Plus |
| arm_2L | 13848252..13849003 | 154..907 | 99 | | Plus |
