FMO01963.5prime Sequence
1197 bp (1020 high quality bases) assembled on 2008-04-28
> FMO01963.5prime
CAGTCGACATGAGGCCATACCAAGTAGTTTGCATCGTAGGTAAGTCTCGC
ATATCGAAGCTGACCAGTTCTGGAAGTCCCATAATTAACTGGTATGCGCC
CATTTCCTTTTTAGCAGTAGCAGCTCTGCTGCTTTTGGAGGCGATTCCCG
CGGATGCAAAGCGGCGCAAGCACAAGGGCTCCGATCATCACTATGAAAAG
TCTGATCCCCACAAGACCAAGACAAAGACCAAGTGGTCTAGCTCCACGGA
TTTGGCTGGAAACACTCCAATTTCCACCGAAGAGCACGGCTACTATGTAA
AGCGCACCTTTGCGGCTCCCGGTGAGATTGGAGCCGCACAGAAGCGTCTA
AGTCCCCCCTATTTGGCCATTCCCATCGCCTGGTTCAGCTGTGAGTCGGG
CCAGAAGAATTGCCAGTCTTCCAATTCCGCGGCTATCAACAGTGCCGCGC
AGTCCTTGAGCGAGGGCTATCTGTGCGACGATGATTGCGATGAACTGTAC
GAGCCCATCTGCGGCAGGACCACCTCAGAGGTGGCCGTTTTCTACAACAA
GTGCAAGTTGGGTGTAGCCAAGTGCCGATCCCACGGTCTTTGGACGGACT
TCGCCTATGCCGAGTGCCAGGCGAAATATCCGCAGGAAACTGCCTATGCC
GACAAGAAGTTCCGGTCATCGCCTTATTTCCGGGATGCGGCCATCGTGGA
GCAATTGAAGCTGGAGGAGGAGAAGCGTAAGCAGGAGGAGGAACAACACA
AGCTGGAGAAGGAGCAAAAGAAGAAGGAGAAGGCTGAGAAAAATAAGAAC
GAGAAAGGACAGCAGCGAAAGCAGCGAGGAGAAAGATGACCAAAAGGAAA
ACAAGCAGAATGATCCCCTTTCCCTAATGCCACAGAAGAAAGTGGAATCC
ACCCAGAAGCCAGTGCCAGTTCCTATTCAGTAGCAGTTCCAAAACCAGTT
TCAGTTTGGAGCTGCAAGACGACGAGACACGCTATGCCGCTATGCACTGA
GACCTCCCCGCCCAAACTCTGAGAATCGCGCCCTTCACAGCAGACCTACC
AAGGCAGAACATGATAGCTCAAGTACAGTACTGCAAGCTTCTAGACATCG
GTGGCGCGGTCAGTAAGGGCATAATCTAATCTACTAATCATCCAAACTAG
CCTAAGGAGATCTTGCATGACTAGGGCGCTGGAATCTCCCCATAGAT
FMO01963.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:34:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ImpL1-RB | 1230 | CG10717-RB | 34..1124 | 7..1076 | 4800 | 97.3 | Plus |
| ImpL1-RA | 1160 | CG10717-RA | 69..1054 | 112..1076 | 4275 | 97.1 | Plus |
| ImpL1-RC | 1157 | CG10717-RC | 70..1051 | 116..1076 | 4255 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:34:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 13382803..13383753 | 7..957 | 4630 | 99.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:34:52 has no hits.
FMO01963.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:16 Download gff for
FMO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10717-RB | 11..995 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:53 Download gff for
FMO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RB | 27..1011 | 1..979 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:31 Download gff for
FMO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ImpL1-RB | 27..1011 | 1..979 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:31 Download gff for
FMO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 13382796..13383780 | 1..979 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:53 Download gff for
FMO01963.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 13375896..13376880 | 1..979 | 98 | == | Plus |
