FMO01965.5prime Sequence
787 bp (346 high quality bases) assembled on 2008-04-28
> FMO01965.5prime
CAGTCGACATGTGCCGCTGCTGTCAAAACTGCTGGGAAGATTTCTACTGG
AATTGCTTCGAGGAGCGTTTCTGCTACGACGAATCCATCGCCAACTACAA
TCCCGAGGAGGACGAGGACTACTTGGCGTCCAGGAAAAATGGCCAGATCA
TTGGACGCATACAACCGACATCGGTGGATAATAATAATTCGCTGACGGTG
CCCCAACCGATTTGCGATCAGCCGCAAATGAGGCAGGGCAACTCGAGCTT
GGGCCTGAGCCTAATGAGCGCCAAGATCCACGAGGAGGACTATCGTCGGG
GAAACAAAAGATCAATGTGCCCAACCTGGGGACCCGGAGATAACTGGGGG
GTTTTTGCCCATTTCGCAAATCCTTCCAGGAACCATCACCCCACCAGCTT
GAACGGGAACACCCCCAAAACCTATTCGGGCCGGATCCATTCCCCGAATC
CGAAATGGCCAAAAACTCCCCCGGCTCACAAAAAAGATTAATTGCTCCAA
CTTCGGGAAGGAAAGGAGGGCCCCAGGGGGCCCCCCCCCCATTTTGGGGG
GGGGGCGGCAAAGGGGAAAAAAAGGGGAAAAAACCCCCCCGCAAAAAACC
TTTTTCCGGGGGGGGGCCCAGGGTATTTTTTTTTTGAAAACAGTTTTTTA
AAACTTCTTTTTGGGGGGCGGGGCCCAGAAGGGGGCTCAATACACAATTA
AATATACATAATACTACACACAGAGAAAACTCTGGCATAAATGTGTAGAT
TCACAATAAAAAACGCGGCGCGCACACAGTTTAATAA
FMO01965.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:57:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG17834-RF | 1331 | CG17834-RF | 370..902 | 9..548 | 1775 | 90.7 | Plus |
| CG17834-RD | 1164 | CG17834-RD | 203..735 | 9..548 | 1775 | 90.7 | Plus |
| CG17834-RB | 1236 | CG17834-RB | 275..807 | 9..548 | 1775 | 90.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:57:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8536893..8537071 | 90..268 | 895 | 100 | Plus |
| 2L | 23513712 | 2L | 8536207..8536268 | 29..90 | 310 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:57:28 has no hits.
FMO01965.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:18 Download gff for
FMO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RD | 185..585 | 1..411 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:57 Download gff for
FMO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RB | 268..668 | 1..411 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:06 Download gff for
FMO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17834-RB | 268..668 | 1..411 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:06 Download gff for
FMO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8536207..8536268 | 29..90 | 100 | -> | Plus |
| 2L | 8536894..8537071 | 91..268 | 100 | -> | Plus |
| 2L | 8537231..8537290 | 269..330 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:57 Download gff for
FMO01965.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8536207..8536268 | 29..90 | 100 | -> | Plus |
| arm_2L | 8536894..8537071 | 91..268 | 100 | -> | Plus |
| arm_2L | 8537231..8537290 | 269..330 | 93 | == | Plus |
