FMO01967.5prime Sequence
1205 bp (1035 high quality bases) assembled on 2008-04-28
> FMO01967.5prime
CAGTCGACATGAAGACTTTCCTGATTTTGGCAATCTTTGCTCTAGCCGCT
TCGGCTTATGCTCTGGAGGAATCCGAGCGCGTCAACGGGGAGAACGGCTG
GTACGTTCCCCAGCAGGACGGCTCCTTTGAGTGGGTGGACATGGATGTCG
CTGAGGAGTGGATGGAGGCCCAGGAGAAGCTTGAGGGCCGTGGCTTGACC
ACCGTTCCCGTGAACTTCTACCTCTTCACGCCCAAGAACCCCTCGAGCAG
CAAGCACATCTACGCCACTACCAAGTCCATTTCCAAGTCCAACTTCAACC
CTGCTCACCCCACCCGTTTCGTGATCCACGGCTGGACCCAGAGCTACTTG
AACAGCATGAACTCGGACATCCGCAAGGCATTCCTCTCTAAGGGAGACTA
CAACGTGATCGTTGTTGACTGGGCCCGTGCCCGTTCCGTGGATTATGCCA
CCTCTGTTATGGCTGTCGCTGCCACCGGAAAGAAGGTTGCCAAGATGATT
AACTTCCTGAAGGACAACCACGGTCTGAATCTTAATGACGTATATGTGAT
TGGTCACAGCTTGGGCGCCCATGTGGCTGGATATGCCGGCAAGAACACCG
ACGGCCAGGTGCACACCATCATTGGTCTGGACCCCGCCCTGCCCCTCTTC
AGCTACAACAAGCCCAACAAACGTCTGAATTCCGACGATGCCTGGTATGT
GGAGTCTATCCAGACCAACGGTGGCACTCTGGGATTCCTGAAGCCCATCG
GCAAGGGAGCTTTCTATCCCAACGGAGGAAAGACCCAGCCCGGCTGCCCT
CTGGATGTGACTGGAGCCTGCTCCCACGGACGCTCAACAACCTACTACGC
CGAGGCCGTCTCCGAGGACAACTTCGGAACCATGAAGTGCGGAGACTACG
AGGAAGCCGTTGCCAAAGGAGTGCGGAGCACCTACTCCAGCGTTCGCATG
GGAGCTGATACCAACGCTACATGGTCGAGGGTGACTTCTATGTGCCGTGA
ACAGCAGCCTCCCTCGGCATGATTACGCAAGCTTTCTAGACATTCGTTTG
GCCGCGGCCCAGTAGTGTATAATCATATTCATAATCATATCATATCCACA
ACTAGCCTAGGAATCTGCATGACTAGGCTGGATCCTAAATAAAGCCGGCA
AACGAGCGTCTGAACAATCGAATGTGAGATCTCGAAGGGCTCATACGTGA
GATCC
FMO01967.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6271-RA | 1072 | CG6271-RA | 22..1042 | 9..1025 | 4930 | 99.2 | Plus |
| CG6277-RA | 1085 | CG6277-RA | 31..1051 | 9..1025 | 3175 | 87.8 | Plus |
| CG6283-RA | 1083 | CG6283-RA | 319..1039 | 311..1024 | 1275 | 79.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 27025019..27025979 | 1006..48 | 4595 | 99.5 | Minus |
| 3R | 32079331 | 3R | 27022137..27023067 | 996..67 | 2925 | 87.9 | Minus |
| 3R | 32079331 | 3R | 27020316..27021002 | 993..311 | 1140 | 79.1 | Minus |
| 3R | 32079331 | 3R | 27006027..27006439 | 955..546 | 825 | 81.6 | Minus |
| 3R | 32079331 | 3R | 27018697..27019142 | 996..555 | 370 | 74.3 | Minus |
| 3R | 32079331 | 3R | 27017480..27017623 | 767..624 | 225 | 77.1 | Minus |
| 3R | 32079331 | 3R | 27026049..27026088 | 48..9 | 200 | 100 | Minus |
| 3R | 32079331 | 3R | 27019251..27019307 | 446..390 | 195 | 89.5 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:53:13 has no hits.
FMO01967.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:20 Download gff for
FMO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6271-RA | 13..1033 | 9..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:06 Download gff for
FMO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6271-RA | 22..1042 | 9..1025 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:21:48 Download gff for
FMO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6271-RA | 22..1042 | 9..1025 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:21:48 Download gff for
FMO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 27025030..27025978 | 49..996 | 99 | <- | Minus |
| 3R | 27026049..27026088 | 9..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:06 Download gff for
FMO01967.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22850752..22851700 | 49..996 | 99 | <- | Minus |
| arm_3R | 22851771..22851810 | 9..48 | 100 | | Minus |
