FMO01969.5prime Sequence
581 bp (581 high quality bases) assembled on 2008-04-28
> FMO01969.5prime
CAGTCGACATGTCAGCGGAGAGGAACAAGAGTGGCGAAGTACGCAGTGCA
GCTGGAGGATTGGAACTGGCATCTGCGAGTGGAGCAAGTGCATCCGAGAC
GGACAATGTGAGCGCCCTTGAACTGCAGTCCAACAAGCGCATGCTGTACT
TTAGCGACGGCGTCATGGAGGAGTTGTCCTCGGGCAGCGAGGACGAGGCG
GATGCGGAAATGGGCGACAAATGCTACGACGTCCATTTAAACGAGAGCGA
AATGCCGCTGGGACCACGCCTGCGTTACAAGGCCAGCAGGATGGGCAACC
GATTCCTGGCCGGCATCGACTATGTGGGCGGTGGGCTGGCCCACCTGCTT
GGTATCACCAGCAGCAAGTATGCCAGCGAATTGGAGAACTACCACAGGGC
CAAGGAGCACGGCGACGAGGACCTTGACAATTGGCACCCGCGGGCCATGT
CGACCACGACCAGTAGCAGCAACAACAACAGCAGCGGCAACAACAATCGC
AACGAAACCATCGTCCTATGCGAACCAACACGCAGCGAGGCGACCTTGCC
ACCCACACGGCAGGCAAGCTTTCTAGACCAT
FMO01969.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8300-RA | 1060 | CG8300-RA | 271..826 | 8..563 | 2780 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 7105792..7106111 | 244..563 | 1600 | 100 | Plus |
| X | 23542271 | X | 7105155..7105392 | 8..245 | 1190 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:53:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2449..2562 | 453..563 | 175 | 64 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2682..2912 | 342..563 | 168 | 57.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2524..2682 | 354..512 | 166 | 60.6 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6727..6881 | 352..512 | 158 | 60.5 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1056..1107 | 450..501 | 152 | 76.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1540..1605 | 465..530 | 150 | 69.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6732..6815 | 453..536 | 149 | 67.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6768..6851 | 453..536 | 149 | 67.1 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1104..1163 | 453..512 | 147 | 71.7 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2308..2352 | 459..503 | 144 | 80 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6819..6881 | 453..515 | 144 | 69.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2318..2395 | 451..530 | 143 | 67.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6750..6830 | 453..532 | 141 | 65.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2264..2452 | 351..530 | 139 | 57.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6729..6772 | 453..496 | 139 | 79.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2788..2838 | 459..509 | 138 | 74.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6723..6796 | 465..538 | 135 | 68 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1549..1612 | 453..512 | 130 | 71.9 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6719..6751 | 464..496 | 129 | 87.9 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1110..1178 | 462..530 | 129 | 65.2 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2577..2626 | 447..495 | 121 | 74 | Plus |
| TART-A | 13424 | TART-A 13424bp | 897..942 | 449..493 | 119 | 76.1 | Plus |
| TART-A | 13424 | TART-A 13424bp | 12075..12120 | 449..493 | 119 | 76.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1518..1591 | 467..544 | 118 | 68.4 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2421..2547 | 451..576 | 118 | 61.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 1546..1599 | 453..506 | 117 | 68.5 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 5649..5720 | 470..544 | 114 | 68.4 | Plus |
| Doc3-element | 4740 | Doc3-element DOC3 4740bp | 529..580 | 468..521 | 112 | 70.4 | Plus |
| gypsy11 | 4428 | gypsy11 GYPSY11 4428bp | 979..1011 | 453..485 | 111 | 81.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 6769..6920 | 352..503 | 110 | 55.8 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 151..200 | 460..506 | 108 | 72 | Plus |
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 9181..9230 | 460..506 | 108 | 72 | Plus |
FMO01969.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:22 Download gff for
FMO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8300-RA | 250..816 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:22 Download gff for
FMO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8300-RA | 265..831 | 1..569 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:43 Download gff for
FMO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8300-RA | 265..831 | 1..569 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:43 Download gff for
FMO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 7105149..7105392 | 1..245 | 98 | -> | Plus |
| X | 7105794..7106116 | 246..569 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:22 Download gff for
FMO01969.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6999182..6999425 | 1..245 | 98 | -> | Plus |
| arm_X | 6999827..7000149 | 246..569 | 99 | | Plus |
