FMO01971.5prime Sequence
710 bp (710 high quality bases) assembled on 2008-04-28
> FMO01971.5prime
CAGTCGACATGAGTTTGGTGTGGACTTTGATCGCCGGATTTCTCTATGCG
GAAATCGCACTGGTCCTTCTGCTGGTGCTGCCGGTGCTCACTCCTTACCG
CTGGAACCGGTTCTTCAAGTCCAAATTCCTATCGATGTTGGGACAACAGG
CGCACATATATTTCCTGCTGATCATGGGAATTCTGGTCATTTTCCTCCTG
GAGGCCATTCGCGAGATGCGCAAGTACTCCGGCTTGCAGCAGTCTAACGA
GGTCCACTTGAACGTGGAGATGCAGCACAGCATGAAGCTGTTCCGTGCCC
AGCGGAACTTCTACATCTCTGGATTCGCCATTTTCCTTGCCCTGGTCATC
CGGCGACTGGTAAACTTGATCTGCACCCAGGCCAATCTCATGGCCCAGAG
CGAGGCTTCCTTCAAGCAGGCACAGAGCGCCACTGCAGCCGCACGTTCCT
TGCTGGAGAACAAGAACACCGAGAAGGCCAAGGAAGCCGGCGAGGATACC
ACTCTCATCGAGCTCAACAAGCTGCGCGAGCGCGTCCAGGAGCTAACCTC
CGACTTGAATCGCGAAAAGAAGGACAAGGAGGCGGTTAAGTCGCAGGCGG
AGAGCATCAACCGCGAGTACGACCGACTCACCGAGGAGTACAGCAAGCTG
CAGAAGAAGATAACCATCGGCGGAGGCGGAAACAAGGATGATGCAAGCTT
TCTAGACCAT
FMO01971.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13887-RE | 1446 | CG13887-RE | 261..944 | 9..692 | 3420 | 100 | Plus |
| CG13887-RB | 1262 | CG13887-RB | 261..944 | 9..692 | 3420 | 100 | Plus |
| CG13887-RC | 1159 | CG13887-RC | 158..841 | 9..692 | 3420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 838121..838624 | 9..512 | 2520 | 100 | Plus |
| 3L | 28110227 | 3L | 839248..839429 | 511..692 | 910 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:26 has no hits.
FMO01971.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:24 Download gff for
FMO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13887-RB | 257..958 | 1..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:54:57 Download gff for
FMO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13887-RC | 150..851 | 1..703 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:33 Download gff for
FMO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13887-RC | 150..851 | 1..703 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:33 Download gff for
FMO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 838113..838624 | 1..512 | 99 | -> | Plus |
| 3L | 839250..839439 | 513..703 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:54:57 Download gff for
FMO01971.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 838113..838624 | 1..512 | 99 | -> | Plus |
| arm_3L | 839250..839439 | 513..703 | 97 | | Plus |
