FMO01972.5prime Sequence
1207 bp (1033 high quality bases) assembled on 2008-04-28
> FMO01972.5prime
CAGTCGACATGGGAAGTTTTCCAGCTCTACTTGTTGTTGTCGGCTCGCTG
GCATTGGGCGCGAATGCTCAACTCCCGCCCATCAATTGTGTTGCAAAAAT
TCCGAGTGGCCGTGTCACCGGTCACTGCATTTCGATCCGGGAGTGTGACT
ACTTCATGAGAATCCTGCTATCCGGCAATCTCAGCCAGAGCGATCGCAAC
CTGCTCCGTGATAATCAGTGCGGAGTGCGGGGCAACGACGTCCAGGTATG
CTGTCCTAGTACCGCCGGCTTGGGTGCCCTGACCCACCCACTTTTGCCCT
CGGATTGCGGAAAGGTTCGTTGGCAGCGTTCGAATGACACAGATACGCGA
ATCCGGGAGTTTCCCTGGCTGGCCCTCATTGAGTATACGCGCGGCAACCA
GGAGAAGATCCATGCGTGTGGCGGTGTGCTTATCAGTGATCGGTATGTGC
TAACTGCTGCCCATTGTGTGGCCCAGGCGGCGACTAGCAATCTGCAGATT
ACTGCTGTCCGGTTGGGTGAATGGGACACTAGCACGAATCCCGACTGTCA
GTACCATGAGGATAGTAAAGTGGCGGATTGCGCGCCTCCCTACCAGGACA
TAGCCATCGAGGAGTTGCTTCCACATCCGCTCTACAATCGCACCGACAGG
ACGCAGATCAACGACATTGCCCTCGTCCGACTGGCAAGTCCTGCCAAGCT
CAACGACTTTGTGCAACCCATTTGCCTGCCCAACAAGCAGCTGCGAGCGG
ACGAGCTGGAGGACCTGGTCACCGAGGTGGCCGGATGGCAGGCTAGTTCC
TCGCAAAGGATGCGAAAAGGTTATGTGACCATTAGTTCGATTGAGGAGTG
TCAAAGGAAGTACGCCAGCCAGCAGTTGCGCATCCAAGCCTCGAAGCTCT
GTGGCCTGACCAATTCCCAGGAGTGCTACGGCAACGCTGGTGGACCACTG
ATGCTGTTCAAGACGATGGCTATCTGCTCGGTGGACTGTGTCGTTCGGAC
CCGTTCCCTGCCCAATCCCGACTGACCGATGTCTACACAAGGTGGCGTCC
TACATCGATTGATTCACGACAGTCTCAAAGCAGCAGGCTTCTAGAACATT
CGTTTGGCGCGCGTCCAGTATGCATAATCCATATCATATTCTATCTAATC
CACTAGCCTAGGAATCTGGACTGGACTAGGCTTGTATCTCCCACAAAAAA
GACGCCC
FMO01972.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3505-RA | 1185 | CG3505-RA | 51..1131 | 8..1082 | 5225 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14658479..14659174 | 393..1082 | 3150 | 98.9 | Plus |
| 3R | 32079331 | 3R | 14657643..14657824 | 66..247 | 910 | 100 | Plus |
| 3R | 32079331 | 3R | 14658258..14658408 | 244..394 | 755 | 100 | Plus |
| 3R | 32079331 | 3R | 14657497..14657555 | 8..66 | 295 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:17:24 has no hits.
FMO01972.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:26 Download gff for
FMO01972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3505-RA | 19..1113 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:55:11 Download gff for
FMO01972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3505-RA | 33..1127 | 1..1090 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:19 Download gff for
FMO01972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3505-RA | 43..1137 | 1..1090 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:19 Download gff for
FMO01972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14657489..14657555 | 1..66 | 95 | -> | Plus |
| 3R | 14657644..14657822 | 67..245 | 100 | -> | Plus |
| 3R | 14658260..14658407 | 246..393 | 100 | -> | Plus |
| 3R | 14658480..14659174 | 394..1082 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:55:11 Download gff for
FMO01972.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10483211..10483277 | 1..66 | 95 | -> | Plus |
| arm_3R | 10483366..10483544 | 67..245 | 100 | -> | Plus |
| arm_3R | 10483982..10484129 | 246..393 | 100 | -> | Plus |
| arm_3R | 10484202..10484896 | 394..1082 | 98 | == | Plus |
