FMO01973.5prime Sequence
839 bp (839 high quality bases) assembled on 2008-04-28
> FMO01973.5prime
CAGTCGACATGAAGTTCCTGATCATCCTTGCCCTGGCTGTGGCCGCCTCC
GCTTTCCCCGAGCCGGAGCTGCGCCATCGCAGCCGCGAGATGCCCGTCGT
TGGCGACATTGGAGGTCGCATCACCGGAGGAAGCAACGCCGCCGTCGGCC
AGTTCCCCTACCAGGTGGGACTTTCCCTGAAGCTGAGTGCTCTGTCCAGC
GCCTGGTGCGGTGGTTCTCTGATCGGCAGCACCTGGGTCCTGACCGCTGC
TCACTGTACCGATGGAGTTCAGTCCGTGACCGTCTACTTGGGCGCCACCG
TGCGCACCTCCGCCGAGATCACCCACACCGTGTCCAGCTCCGACATCATC
ATCCACTCCGGCTGGAACAGCGCTAACCTGCGCAACGACATCTCCCTGAT
CAAGATCCCCGCCACCTCCTCCAGCAGCAGGATCTCCGCCGTCAAGCTGC
CAAGCATCTCCAACTCCTACTCGACCTTCGTCGGTGACGTCGCTGTCGCC
TCCGGATGGGGACGCACCAGTGACACCTCCAGTGGTGTGGCTACCAATCT
TCAGTATGTCGACCTGACTGTGATCACCAACACCAAGTGCGCCCAAACCT
ACGGCACCTCGGTCGTGACCGACTCAACCCTCTGCGTGGCCACCACCGAC
GCCAAGTCCACCTGCAACGGTGACTCCGGCGGTCCTCTGGTCCTCAAGTC
GTCCAGCGAGCAGATCGGTCTGACCTCATTCGGTGCCTCTGCCGGTTGCG
AGAAGGGCTACCCCGCTGCCTTCACTCGTGTGACCAGCTACCTGGACTGG
ATCAAGACTAACACTGGCATCGCAAGCTTTCTAGACCAT
FMO01973.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Jon65Aiv-RA | 904 | CG6467-RA | 42..854 | 9..821 | 4065 | 100 | Plus |
| Jon74E-RA | 1452 | CG6298-RA | 1155..1305 | 656..806 | 335 | 82.2 | Plus |
| Jon99Ciii-RB | 1240 | CG31362-RB | 210..407 | 204..401 | 240 | 76 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6039529..6040085 | 265..821 | 2785 | 100 | Plus |
| 3L | 28110227 | 3L | 6039196..6039452 | 9..265 | 1285 | 100 | Plus |
| 3L | 28110227 | 3L | 17546886..17547036 | 806..656 | 335 | 81.5 | Minus |
| 3L | 28110227 | 3L | 6051486..6051648 | 656..818 | 215 | 75.5 | Plus |
| 3R | 32079331 | 3R | 29922425..29922622 | 204..401 | 210 | 73.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:53:40 has no hits.
FMO01973.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:27 Download gff for
FMO01973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6467-RA | 40..852 | 9..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:13 Download gff for
FMO01973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon65Aiv-RA | 42..854 | 9..821 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:22:01 Download gff for
FMO01973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Jon65Aiv-RA | 42..854 | 9..821 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:22:01 Download gff for
FMO01973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6039196..6039452 | 9..265 | 100 | -> | Plus |
| 3L | 6039530..6040085 | 266..821 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:13 Download gff for
FMO01973.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6032296..6032552 | 9..265 | 100 | -> | Plus |
| arm_3L | 6032630..6033185 | 266..821 | 100 | | Plus |
