Clone FMO01974 Report

Search the DGRC for FMO01974

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:19
Well:74
Vector:pMK33-CFH-BD
Associated Gene/TranscriptOscillin-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01974.5prime Sequence

845 bp (845 high quality bases) assembled on 2008-04-28

> FMO01974.5prime
CAGTCGACATGAGATTGGTCATCTTGGAAACCAGCGACTCGGTGGGCAAG
TGGGCGGCCAAATATGTGATGAAACGCATCAATGACTTTCAGCCGAGTGC
CGACAGATACTTCGTTTTGGGCCTGCCCACGGGATCTACGCCATTGGGAA
TGTACAAAGAACTGATCGAGTTTCATAAGCAGGGCAAGGTATCCTTTCAG
TATGTGAAAACCTTCAATATGGATGAGTATGTGGGACTGGCCAGAGATCA
CCATGAGAGCTATCACTACTTCATGTGGAACAACTTCTTCAAGCACATCG
ACATTGAGCCCAAGAATGTGCACATTTTGGATGGCAATGCAGCTGATCTG
GTGGCCGAGTGCAATAAGTTCGAGGATCAGATCCGCGAGGCTGGAGGAGT
GGAGCTGTTCATCGGTGGCATCGGACCCGATGGCCATATTGCCTTCAATG
AGCCCGGCTCCTCATTGGTGTCCCGAACGCGGGTGAAAACTCTGGCGCAG
GATACACTTGAAGCGAATGCCCGTTTCTTTGACAACGATATGAGCAAGGT
GCCCAAACAGGCTTTAACCGTGGGCGTTGGCACTGTGATGGACTCCAAGG
AGGTGATGATCCTCATCACCGGAGCTCACAAGGCATTTGCCCTGTACAAG
GCCATCGAGGAGGGTGTGAATCACATGTGGACCGTCAGTGCCTTCCAGCA
GCATGCAAATACCCTGATGATCTGCGACGAGGATGCCACTTTGGAGCTGA
GAGTTAAGACCGTTAAATATTTCAAGGGCATTCTCAGAGATCTAGACGAA
GGCTCCCCACTGGAGGGCTACAAAAACGCAAGCTTTCTAGACCAT

FMO01974.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:25:28
Subject Length Description Subject Range Query Range Score Percent Strand
Oscillin-RH 1299 CG6957-RH 218..1036 9..827 4095 100 Plus
Oscillin-RF 1388 CG6957-RF 218..1036 9..827 4095 100 Plus
Oscillin-RC 1206 CG6957-RC 208..1026 9..827 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:25:26
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5548167..5548710 234..777 2720 100 Plus
2L 23513712 2L 5547971..5548101 105..235 655 100 Plus
2L 23513712 2L 5547815..5547912 9..106 490 100 Plus
2L 23513712 2L 5549015..5549067 775..827 265 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:25:27 has no hits.

FMO01974.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:28 Download gff for FMO01974.5prime
Subject Subject Range Query Range Percent Splice Strand
CG6957-RB 546..1374 1..827 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:37:28 Download gff for FMO01974.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1026 9..827 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:35 Download gff for FMO01974.5prime
Subject Subject Range Query Range Percent Splice Strand
Oscillin-RC 208..1026 9..827 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:35 Download gff for FMO01974.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5547805..5547912 1..106 96 -> Plus
2L 5547973..5548100 107..234 100 -> Plus
2L 5548168..5548709 235..776 100 -> Plus
2L 5549017..5549067 777..827 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:37:28 Download gff for FMO01974.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5547805..5547912 1..106 96 -> Plus
arm_2L 5547973..5548100 107..234 100 -> Plus
arm_2L 5548168..5548709 235..776 100 -> Plus
arm_2L 5549017..5549067 777..827 100   Plus