Clone FMO01975 Report

Search the DGRC for FMO01975

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:19
Well:75
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG3501-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01975.5prime Sequence

635 bp (635 high quality bases) assembled on 2008-04-28

> FMO01975.5prime
CAGTCGACATGTGCGACTACAAGGTCTCGGAGCGGGCGTACGCCAAGTTG
ATATTCCACGCGGCCAAGTATCCACACCAGGCGGTCAACGGACTCTTGCT
GGCCGAGAAGACATCGAAGGGCTCCCAAGTGGAAATCGTGGATGCGATTC
CGCTTTTCCACCAGTGCCTGTATGTCACCCCCATGGCGGAGGTGGCCCTC
ATGCTGATCGATGCCCACGCCGAACGGGAAGGATTAGTAATCGCAGGCTA
CTACGCAGCACCGGAGAACTTCTACGACAACCAGGTCGACAAGACCCCAG
CCGCCAAGATAGCTGACAAGATCCAGGAGAACTTCAAGAACGCCTGCTTT
GTGGTGGTGGACAACAAACTGATGACGCTGCAGCACGACCGAGCCGCCAT
CCAGGTATTCAACTGTCCCGGAGACTCTGGAGCAAGGTGGTCAAAGGCCA
AGTTTACGCTCTCACAGGCGTCCGATACATTGGAAGGCGTGTCGCTGCTG
CTGAAGCGCGGAGCCATGCGGGATTTGGTTGACTTTGACAACCATCTAGA
TAATCCGGACAAAAACTGGACCAACGACTTCCTGAATCAGCCGCTCAACG
ATCTGCAGAAACTGTACGCAAGCTTTCTAGACCAT

FMO01975.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:19:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG3501-RA 888 CG3501-RA 92..700 9..617 3045 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:19:31
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22881510..22881921 617..206 2060 100 Minus
2R 25286936 2R 22882402..22882599 206..9 990 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:19:32 has no hits.

FMO01975.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:29 Download gff for FMO01975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 84..697 2..617 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:29 Download gff for FMO01975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 87..700 2..617 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:16:02 Download gff for FMO01975.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3501-RA 87..700 2..617 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:16:02 Download gff for FMO01975.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22881510..22881920 207..617 100 <- Minus
2R 22882402..22882604 2..206 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:29 Download gff for FMO01975.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18769033..18769443 207..617 100 <- Minus
arm_2R 18769925..18770127 2..206 98   Minus