Clone FMO01976 Report

Search the DGRC for FMO01976

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:19
Well:76
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG33062-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01976.5prime Sequence

398 bp (398 high quality bases) assembled on 2008-04-28

> FMO01976.5prime
CAGTCGACATGGATCAACTCAAACTCAGACCTTGTAACTGCCTTACCGCA
CATCCACTGGCAGAGTGGGTGTGGGTGGAATGTGAGCGGCTGTGCACCCT
TCGTCTTGCCAGTTTTCGAAAAGGGTTCTCCGAAAAGGGTTGCCACCGCA
CCCCGATGCCCATTGAGGACTCATGGAGCAAACGGTTTCGGCATTTCCCT
TTTGTTTCCGCCTGCATCCTTTGGCCAAGACACGGACACCTTCCCCTTCC
CACCACGCTGCCACAATGGAAAATACAATTTTCGCAATCTTTGCTTATCT
TTTCATCTCTCTGTGGCTGCCTCGTTTGCTGCACGATTCGTTGTTGCTGC
TGTTGGCCATCCAGAAAATCGGTAAAAAGCGCAAGCTTTCTAGACCAT

FMO01976.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:53:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG33062-RB 933 CG33062-RB 245..616 9..380 1845 99.7 Plus
CG33062-RA 954 CG33062-RA 266..637 9..380 1845 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:53:57
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19442106..19442394 380..92 1445 100 Minus
3L 28110227 3L 19446035..19446118 92..9 405 98.8 Minus
Blast to na_te.dros performed 2014-11-28 22:53:58
Subject Length Description Subject Range Query Range Score Percent Strand
Dvir\TART 8500 Dvir\TART TARTVIR 8500bp 1536..1626 355..267 117 63.4 Minus

FMO01976.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:24 Download gff for FMO01976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 258..641 1..385 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:46 Download gff for FMO01976.5prime
Subject Subject Range Query Range Percent Splice Strand
CG33062-RA 258..641 1..385 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:46 Download gff for FMO01976.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19442102..19442393 93..385 99 <- Minus
3L 19446035..19446124 1..92 94   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:24 Download gff for FMO01976.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19439135..19439224 1..92 94   Minus
arm_3L 19435202..19435493 93..385 99 <- Minus