FMO01980.5prime Sequence
695 bp (695 high quality bases) assembled on 2008-04-28
> FMO01980.5prime
CAGTCGACATGAGCATGGAGAAAGTAGCCAACAAGCAGTACGAGACGAAA
AACTGGCCAGATATTGTCGACAGCGACGACAGCGATGTGGATAATCAGAT
AGATGTGGACAACCTGCCACCACTGGAGGTGGGACCCGGCGAGAACCGGC
TGCAGCACACATACTGCCTCTGGTTCTCTCGCAAGGAGACGCAGCGGGCG
GCCGCCGACTACAGCAAGTCGCTGCACATGGTCGGCCGGTGCGCCAGCGT
GCAGCAGTGGTGGTCGCTCTACTCGCACCTCATCCGGCCCACCGCCCTGA
AGCCCTACCGGGAGCTCCTCCTCTTCAAGCAGGGCATCATACCGATGTGG
GAGGACCCGGCGAACAGCAAGGGCGGCCAGTGGTTGATACGACTGCGCAA
GAACAAGGTCGACCGGGCCTGGGAGAACGTTTGTATGGCGATGCTCGGGG
AGCAGTTCCTCGTCGGCGACGAGATATGCGGAGTCGTGCTACAGACGAAA
TATCCGGAGGATAGCTTATCAGTATGGCACCGGACTGCCACTGATATGAC
CAGTACAACACGTATCCGTGATACGTTACGCAGGATATTAAATATACCTC
TAACAACGGCATTGGAGTATAAGATACACTGTGATAGCCTTAAATATGTT
TCAATTAATAAAGGCCCATTGAAAAGCGCAAGCTTTCTAGACCAT
FMO01980.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4EHP-RA | 1855 | CG33100-RA | 454..1122 | 9..677 | 3300 | 99.6 | Plus |
| 4EHP-RD | 1324 | CG33100-RD | 454..1100 | 9..655 | 3190 | 99.5 | Plus |
| 4EHP-RC | 4539 | CG33100-RC | 454..951 | 9..506 | 2445 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24106824..24107284 | 507..47 | 2260 | 99.3 | Minus |
| 3R | 32079331 | 3R | 24064182..24064331 | 655..506 | 750 | 100 | Minus |
| 3R | 32079331 | 3R | 24108469..24108507 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:20 has no hits.
FMO01980.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:49 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:19 Download gff for
FMO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4EHP-RA | 450..1129 | 1..685 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:10 Download gff for
FMO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4EHP-RA | 450..1129 | 1..685 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:10 Download gff for
FMO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24064182..24064330 | 507..655 | 100 | <- | Minus |
| 3R | 24106825..24107284 | 47..506 | 99 | <- | Minus |
| 3R | 24108470..24108511 | 1..46 | 91 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:19 Download gff for
FMO01980.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 19889904..19890052 | 507..655 | 100 | <- | Minus |
| arm_3R | 19932547..19933006 | 47..506 | 99 | <- | Minus |
| arm_3R | 19934192..19934233 | 1..46 | 91 | | Minus |
