FMO01981.5prime Sequence
1207 bp (1043 high quality bases) assembled on 2008-04-28
> FMO01981.5prime
CAGTCGACATGACCCAGGCGGAGATCGTGAAATGTCTGCGGGAGGAGTAT
GAAATCGAACACAACAAGGATCAGAAGCCGGAGAAGGAGGACCTGCCCGC
CATCACCAAAAAGTTCTATCAGCGAGTCTTGGAACTGCTGACCATTCACA
AAGTGCCCTACTCCAAACAAGAAGATGAGGAGACCTACGAAGAGTACCTG
CTGTCGGACACGGAGGAATCGGGAAACAAGAAAAAGAAACAACAGGGAAA
ACTGAAAAACCAAGACTCCGACGACGAGGATGTAGAGGCACGCATTGCCT
CCATCAAGAACAAGCTGCGCCAGAAAAAGGGACCCACAACGGAGCGACAG
CAGAAGCGACGCGAATCTAAAAAGCTTAAACGCAGCAAGGGCGTCCAGAA
ACTGCTCCTCTCCTCGGCCAAAAACCTCAAAAACGAGAACGTCAAGCACC
AGAAACTGAAGAATGGCGTGGTGAAATCAGAACAGGAGACGGAGGACAGC
AAGGAACAGATCCAGCCGGTCAAGGTGCAACCGGTTTACAACCAGGAGGC
CAAGATCGTCTACTCCAAGGTGGACTTTGCCGCCAATCCTGGAGGCAAAG
CCAAGAAGTCTCACCAAAACCCCAAGGAGATTCTGAAGAAGCTGCGCGAC
ACCAAGAAGCACCTAACCGAACTGCGCGAACAGGGCGAAACGGACAAGGC
GGCGGAGATCCAGACGGACATCGCCTGACGCAACGCATTCGACAAGGTCG
AGGGCAAGAATGTCAAGGACGACACCAAGCTGCTGCAAAAGGCCATCAAG
AAGCGGCGCGTGGAGAAGAAGAGTCCAAGACCAAGTGGACTGAACGCAAG
CAGAAGGTGGAGCACGACAAGGAAAAGAGGCAAAGAAGCGACAGGAGAAC
CTGGAGAAGCGCAGCAAGGACAGAAGACCCGGAAACTAAAGACGGCAGCA
GAGGGGTCGCATCATACCCGGCTATGCAGCTTTCTAGACCATTCGTTTGG
CGCGGCGGGCCCAGGTAGTGGTCATAATCATATCATATCATATCATATCC
ACTAGCTAGGAGATCCCTGGTCATGACTAGGGCTGGATTCCTACAATAAA
AACGCCCGGGCGGCAACCGGAGCGTTCTGAACAATCCGAATGGATCTGGA
AGCCTACCGGATCTAATCTCACGGGATCCAGGCAGACCTCGGATTACCAA
AATATTG
FMO01981.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Surf6-RA | 1150 | CG4510-RA | 81..1052 | 9..975 | 4690 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 19903763..19904570 | 975..173 | 3745 | 99 | Minus |
| 3R | 32079331 | 3R | 19904619..19904788 | 178..9 | 835 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:22:03 has no hits.
FMO01981.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:36 Download gff for
FMO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4510-RA | 71..1056 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:37:56 Download gff for
FMO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 71..1056 | 1..981 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:58:38 Download gff for
FMO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Surf6-RA | 72..1057 | 1..981 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:58:38 Download gff for
FMO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 19903755..19904568 | 175..984 | 98 | <- | Minus |
| 3R | 19904623..19904795 | 1..174 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:37:56 Download gff for
FMO01981.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 15729477..15730290 | 175..984 | 98 | <- | Minus |
| arm_3R | 15730345..15730517 | 1..174 | 97 | | Minus |
