FMO01990.5prime Sequence
818 bp (818 high quality bases) assembled on 2008-04-28
> FMO01990.5prime
CAGTCGACATGGGCAGCAAGGGCAAGGCTGGTCTGGACTTCTCCGGCAAA
GTGGTGCTTATCACGGGCGCAGCCTCCGGGATCGGGGCCGCCGCGGCGGA
GATGTTCTCGAAGCTGGGTGCCTGCCTGGCCCTGGTGGATCGGGAGGAGG
AGGGCCTCATATGTGTGATGAAACGCTGCATGAAGATGGGCCACGAGCCG
TACGGCATAGCCGGAGATCTGCTCAAGCCTCCGGAGATCGAATGCATTGC
GCGGAAGACCACGGAGCGCTACGAGGGCAAGCTGGATGTGCTGGTAAATG
GGGCTGGCATCATGCCCACGGGAACGCTGCAGAGCACGGAACTGGCCTGC
TTCACCCACGTGATGGAGGCCAATGTGCGTTCTGGGTTTTATCTGACCAA
GTTGCTGCTGCCCCAGTTGCTGCAGTGTAAGGGCAGCATTGTCAACGTGT
CCAGCGTCTGCGGACTTCGCGCTTTTCCCAATCTGGTGGCCTACAACATG
TCCAAGGCGGCGGTGGACCAGTTTACCCGCTCCCTTGCCCTGGATCTGGG
TCCCCAGGGTGTTCGGGTGAATGCGGTCAATCCGGGTGTGATTCGCACCA
ATCTGCAAAAGGCGGGGGGCATGGACGAGCAGAGCTACGCCGAATTTCTG
GAGCACTCGAAGAAGACCCACGCCCTGGGCCGGATTGGGGAGCCAAAGGA
GGTGGCGGCCGCCATTTGCTTCCTGGCCAGCGAGCTGGCCAGCTTCGTGA
CCGGCGTGACCCTTCCTGTGGACGGTGGCAAGCAGGTCATGTGTCCGCGC
GCAAGCTTTCTAGACCAT
FMO01990.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:44:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31546-RA | 999 | CG31546-RA | 63..854 | 9..800 | 3960 | 100 | Plus |
| CG31549-RB | 991 | CG31549-RB | 465..782 | 429..746 | 390 | 75.6 | Plus |
| CG31549-RA | 1130 | CG31549-RA | 604..921 | 429..746 | 390 | 75.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:44:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 5634771..5635562 | 800..9 | 3960 | 100 | Minus |
| 3R | 32079331 | 3R | 5632795..5633112 | 429..746 | 390 | 74.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:44:14 has no hits.
FMO01990.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:43 Download gff for
FMO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31546-RA | 56..854 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:56:04 Download gff for
FMO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31546-RA | 56..854 | 1..800 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:16:32 Download gff for
FMO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31546-RA | 56..854 | 1..800 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:16:32 Download gff for
FMO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 5634771..5635567 | 1..800 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:56:04 Download gff for
FMO01990.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1460493..1461289 | 1..800 | 99 | | Minus |
