FMO01991.5prime Sequence
836 bp (836 high quality bases) assembled on 2008-04-28
> FMO01991.5prime
CAGTCGACATGAAGGTTTTCGTAGTTTTGGTTCTGGCTCTGGCCTCCGCC
TCCGCTGGGCTCCTGCCCAATATTGCCCCTGTACATCCCCGTGACAGGGT
CTCGACCCCATCCATCACCGGTCGCATCACCAACGGCAAGGACGCCGTTG
CCGGCCAGTTCCCCTACCAGGTGGGACTTAGTTTCTCCAGCTCTGCTGGC
AGTTGGTGGTGCGGTGGCTCCATCATCGGAAACGAGTGGGTGCTGACTGC
TGCTCACTGTACCGACGGTGCCGCCTCCGTGACCATCTACTACGGTGCCA
CTGTCCGTACTAGCCCCGAGTTCACCCAAGTCGTCAGCAGCTCAAAGTTT
AGGCAGCACGAAAGCTACCTGGCTTTGACCATCCGCAACGACATCTCCCT
GATCCAGACTTCGTCCGTGTCCTTCTCGGCTACCGTGAACAAGATCAGCC
TGCCCGCCGTCTCCAACAGCTACTCCACCTACGAGGGAAAGACCGCTGTT
GCCTCCGGATGGGGTCTCACCTCCGACCAAGCCACCGCCGTGTCTCGCGA
TCTGCAGTACGTGGACCTTACCATCATCTCCAACTCCAAATGCCAGGAAA
CCTTCGGAAGCCTGATCGTGACCAGCAGGGTCCTCTGCGTTGACACCACC
AACAAGGCCTCCACCTGCCAGGGTGATTCCGGCGGCCCATTGGCTCTCGA
TGGTGTCCTCATCGGTGCCACCTCCTTTGGATCCGCTGATGGTTGCGAGT
CTGGCGCACCAGCTGCTTTCACCCGTATCACTTACTATCGCGATTGGATC
AAGGAAACTTCCGGTATCGCAAGCTTTCTAGACCAT
FMO01991.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:05:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| yip7-RA | 904 | CG6457-RA | 27..837 | 8..818 | 4055 | 100 | Plus |
| CG10477-RB | 1039 | CG10477-RB | 118..512 | 120..514 | 475 | 75.3 | Plus |
| CG10477-RA | 1361 | CG10477-RA | 118..512 | 120..514 | 475 | 75.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 6035558..6036108 | 268..818 | 2755 | 100 | Plus |
| 3L | 28110227 | 3L | 6035242..6035502 | 8..268 | 1305 | 100 | Plus |
| 3L | 28110227 | 3L | 6050888..6051027 | 120..259 | 355 | 83.6 | Plus |
| 2L | 23513712 | 2L | 4954803..4954940 | 341..204 | 270 | 79.7 | Minus |
| 3L | 28110227 | 3L | 6034048..6034178 | 514..384 | 265 | 80.2 | Minus |
| 3L | 28110227 | 3L | 6034351..6034494 | 263..120 | 240 | 77.8 | Minus |
| 2L | 23513712 | 2L | 4950474..4950571 | 301..204 | 220 | 81.6 | Minus |
| 2L | 23513712 | 2L | 4952816..4952910 | 298..204 | 220 | 82.1 | Minus |
| 3R | 32079331 | 3R | 29922422..29922518 | 204..300 | 200 | 80.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:05:40 has no hits.
FMO01991.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:44 Download gff for
FMO01991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6457-RA | 7..827 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:21:54 Download gff for
FMO01991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yip7-RA | 21..841 | 1..823 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:39:27 Download gff for
FMO01991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| yip7-RA | 21..841 | 1..823 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:39:27 Download gff for
FMO01991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 6035236..6035502 | 1..268 | 98 | -> | Plus |
| 3L | 6035559..6036112 | 269..823 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:21:54 Download gff for
FMO01991.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 6028336..6028602 | 1..268 | 98 | -> | Plus |
| arm_3L | 6028659..6029212 | 269..823 | 99 | | Plus |
