FMO01992.5prime Sequence
930 bp (930 high quality bases) assembled on 2008-04-28
> FMO01992.5prime
CAGTCGACATGCTGCACATAGTATCGGTTGTTATTATAGCCCTGAGTCTG
GGCTGTGCCGTTGGCCAGGATTTGCGGCGTGTGGACGACACCGAGTTGAT
TCAACTCCTGACCGGCAGCAGCAATGTGGTTGTCCTATTCAACAAAAACA
ATTGCCAGCGCTGCGTGGAATATGAGAACATGGTGACCAAGATACGTGCC
CAGCTGGAGGAGACCTTGTCGGCCATTGTGGTCCAGTCGGTGGACAGCAA
CCTGGTATCCATCTATGACCCCAGCAAGGAGCCCGCTTTGGTGTTCTTCA
GGCGAGGAATACCCATTCTATACCATGGCGAGATCAACGATGACGAAATC
CTAGACTTCTTCAATGACAACTTAGAGCCAGCGGTCAAAGAGCTTTCCGA
CGACAACTTCGAGCACCTGACTCAAGCCTCGTCGGGTGCCACTACCGGGG
ACTGGTTTATCTTCTTCTCTTCGGCCGAATGTACCGTCTGTCAGCGACTC
TATGCCGTTTGGGAGTCTGTGGGCGGAAAGCTAAAGCGAAAGCTGAATAT
TGCCCGCATGAACAGTTTGGAGTCTGGAATCTCAACTGCTACGCGACTGG
GAGTATTGGAAGCACCGGCTTTTATTTTCTTGAGGCAAGGAAAGATGTAC
AAATATTCAGCCAAGCAATACAGTCCCGAAGCCTTTGTCCAGTTTGCTGA
GAAGGGATATACCCAGAGCCATCCTCAACCAGTGCCCGCAATCCCAAGTG
CCGTAAACGAATTTTTGGGCCCACTGCAAGTTATTTTGCAGCTGAAAACA
TAACATCGCTGGCGACTTTGAGTATTTTCGCCTTAGTTGCTCTCTTATTC
GTTGGCAAAAGGTTGCCAAAATATTCAGTTCAGAGCCTGCGAAAACAAAA
AATAAGTCGAAAGCAAGCTTTCTAGACCAT
FMO01992.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:54:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11790-RA | 1010 | CG11790-RA | 81..986 | 9..912 | 4480 | 99.8 | Plus |
| CG11790-RB | 1116 | CG11790-RB | 320..1092 | 142..912 | 3815 | 99.7 | Plus |
| CG11790-RC | 1040 | CG11790-RC | 81..826 | 9..754 | 3730 | 100 | Plus |
| CG11790-RB | 1116 | CG11790-RB | 81..213 | 9..141 | 665 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25048025..25048349 | 142..466 | 1625 | 100 | Plus |
| 3R | 32079331 | 3R | 25048442..25048603 | 467..628 | 810 | 100 | Plus |
| 3R | 32079331 | 3R | 25049272..25049431 | 755..912 | 700 | 98.8 | Plus |
| 3R | 32079331 | 3R | 25047786..25047918 | 9..141 | 665 | 100 | Plus |
| 3R | 32079331 | 3R | 25048665..25048790 | 629..754 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:54:40 has no hits.
FMO01992.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:45 Download gff for
FMO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-RA | 87..999 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:55:04 Download gff for
FMO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-RA | 81..993 | 9..919 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:32:38 Download gff for
FMO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11790-RA | 81..993 | 9..919 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:32:38 Download gff for
FMO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25047786..25047918 | 9..141 | 100 | -> | Plus |
| 3R | 25048025..25048349 | 142..466 | 100 | -> | Plus |
| 3R | 25048442..25048603 | 467..628 | 100 | -> | Plus |
| 3R | 25048665..25048790 | 629..754 | 100 | -> | Plus |
| 3R | 25049272..25049430 | 755..911 | 98 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:55:04 Download gff for
FMO01992.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20873508..20873640 | 9..141 | 100 | -> | Plus |
| arm_3R | 20873747..20874071 | 142..466 | 100 | -> | Plus |
| arm_3R | 20874164..20874325 | 467..628 | 100 | -> | Plus |
| arm_3R | 20874387..20874512 | 629..754 | 100 | -> | Plus |
| arm_3R | 20874994..20875152 | 755..911 | 98 | -> | Plus |
