FMO01994.5prime Sequence
578 bp (578 high quality bases) assembled on 2008-04-28
> FMO01994.5prime
CAGTCGACATGTTTATAGTTTTGGTCGTTTGTTTGCTGGCAGTCGCTGCG
GCCGATGTGTCCCATCTGGTCACCCCGGAACCGAAGGTTCCAGCAAGTCC
GTATGTGTTCAGCTACCAAGCTGGCCGTGCTCCCGGCCATGTGGATCGCC
AGCATACCGAGGTGTCCGATGGATCGGGTGTGATCCGCGGTGCTTTCTCC
TATGTGGACCCAAAGAACCAGGTGCGCACCGTACAGTATGTGGCGGATGA
GCATGGTTTCCATCCTCAGCTTAGCCACAAACTGGAGGACAGCGCCGCCG
TCCAGGCAGCCAAGCAAAGGCACTTCGCGGCCTACAATCGGATTGCGCAA
GAGCATGCCAACCACACGCCAGGCCAAGTTGCACTAGCAAATGCCCCCCA
TGCCAGCGCCGCCGTTGCACATGCCACCCAGAAGCACCTGAGCGCCTTCG
AGCGGATCGCTGCCGAGCACGCGGCCATTGGACGCCAACAGGAGGCACAG
CGTCTGGCGCTGGCCGCTCAATCTGAGCATGGAGAGATCGAAGATGGACA
GTACCATCCGGCAAGCTTTCTAGACCAT
FMO01994.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:43:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Obp57d-RB | 1488 | CG30150-RB | 50..602 | 8..560 | 2765 | 100 | Plus |
| Cpr57A-RB | 1488 | CG18066-RB | 50..602 | 8..560 | 2765 | 100 | Plus |
| Cpr57A-RA | 656 | CG18066-RA | 50..602 | 8..560 | 2765 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:43:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 20549631..20549989 | 381..23 | 1795 | 100 | Minus |
| 2R | 25286936 | 2R | 20549382..20549561 | 560..381 | 900 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:43:06 has no hits.
FMO01994.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:47 Download gff for
FMO01994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG18066-RA | 11..570 | 1..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:03 Download gff for
FMO01994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr57A-RA | 43..602 | 1..560 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:16:49 Download gff for
FMO01994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr57A-RA | 43..602 | 1..560 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:16:49 Download gff for
FMO01994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 20549382..20549561 | 381..560 | 100 | <- | Minus |
| 2R | 20549632..20549988 | 24..380 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:03 Download gff for
FMO01994.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 16436887..16437066 | 381..560 | 100 | <- | Minus |
| arm_2R | 16437137..16437493 | 24..380 | 100 | <- | Minus |
