FMO01996.5prime Sequence
641 bp (641 high quality bases) assembled on 2008-04-28
> FMO01996.5prime
CAGTCGACATGGTTTTCTTTGGATTTCCTCAAATTTCAAGGCACTTTTCT
AAGTTTACCAAGATGTCGAAAAGCGCGCTGGTGATTTTGGCTCCCGGAGC
GGAGGAGATGGAGTTCATCATAGCCGCCGACGTTCTGAGAAGGGCGGGCA
TCAAGGTCACCGTAGCCGGTTTGAATGGCGGGGAAGCGGTGAAGTGCTCG
CGGGATGTGCAGATCCTGCCGGACACCTCGCTGGCCCAGGTTGCCTCGGA
TAAGTTCGATGTGGTGGTGCTGCCCGGCGGACTGGGTGGCTCCAATGCCA
TGGGGGAGTCCTCGCTGGTCGGTGACTTGCTGCGCAGCCAGGAGTCTGGT
GGCGGACTCATCGCCGCCATCTGTGCCGCGCCCACCGTTTTGGCCAAGCA
CGGCGTCGCCTCCGGGAAATCCCTCACCTCGTATCCCTCAATGAAGCCCC
AGCTGGTGAATAACTATAGCTATGTGGACGACAAGACGGTGGTCAAGGAT
GGCAATCTGATCACCAGTCGAGGTCCTGGCACCGCCTACGAGTTCGCCCT
CAAAATCGCCGAGGAGCTGGCGGGCAAGGAGAAAGTCCAGGAGGTGGCCA
AGGGTCTTCTTGTGGCCTACAACGCAAGCTTTCTAGACCAT
FMO01996.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| dj-1beta-RA | 733 | CG1349-RA | 27..642 | 8..623 | 3080 | 100 | Plus |
| DJ-1alpha-RA | 735 | CG6646-RA | 115..581 | 69..532 | 305 | 72.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 30807348..30807671 | 150..473 | 1605 | 99.7 | Plus |
| 3R | 32079331 | 3R | 30807732..30807887 | 468..623 | 780 | 100 | Plus |
| 3R | 32079331 | 3R | 30807143..30807284 | 8..149 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:53 has no hits.
FMO01996.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:00:49 Download gff for
FMO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1349-RA | 12..636 | 1..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:45:52 Download gff for
FMO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dj-1beta-RA | 21..645 | 1..627 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:48 Download gff for
FMO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| dj-1beta-RA | 21..645 | 1..627 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:48 Download gff for
FMO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 30807137..30807284 | 1..149 | 97 | -> | Plus |
| 3R | 30807348..30807667 | 150..469 | 100 | -> | Plus |
| 3R | 30807734..30807890 | 470..627 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:45:52 Download gff for
FMO01996.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 26633456..26633612 | 470..627 | 98 | | Plus |
| arm_3R | 26632859..26633006 | 1..149 | 97 | -> | Plus |
| arm_3R | 26633070..26633389 | 150..469 | 100 | -> | Plus |
