FMO02003.5prime Sequence
854 bp (854 high quality bases) assembled on 2008-05-06
> FMO02003.5prime
CAGTCGACATGGCTGCTCAGTTCTTTAATCGCATTGGCCAAATGGGCCTC
GGAGTGGCCGTTTTGGGTGGCGTTGTCAATTCGGCATTATATAATGTGGA
AGGCGGCCACCGGGCGGTCATCTTCGATCGCTTCACCGGCATCAAGGAGA
ACGTGGTCGGCGAGGGTACCCACTTCTTCATCCCATGGGTGCAGCGGCCC
ATCATCTTCGACATCCGGTCCCAGCCCCGCAACGTTCCTGTGATAACGGG
CAGCAAGGATCTGCAGAATGTCAACATCACGCTCCGAATCCTGTACCGCC
CCATTCCAGACCAGCTGCCCAAGATCTACACCATTCTCGGCCAGGACTAC
GACGAGCGTGTCCTGCCCTCCATCGCGCCTGAGGTGCTGAAGGCTGTGGT
CGCCCAGTTCGACGCCGGCGAGCTGATCACCCAGCGTGAGATGGTGTCGC
AGCGCGTTTCCCAGGAACTGACTGTACGTGCCAAGCAGTTCGGCTTTATT
CTGGATGACATCTCGCTCACGCACTTGACCTTCGGTCGGGAGTTCACGCT
GGCCGTCGAGATGAAGCAGGTGGCCCAGCAGGAGGCGGAGAAGGCGCGTT
TTGTCGTGGAGAAGGCCGAGCAACAGAAGCTGGCGTCCATCATTTCGGCG
GAGGGTGATGCCGAAGCCGCTGGCCTGTTGGCCAAGTCATTCGGCGAGGC
CGGAGACGGTCTGGTGGAGCTGCGACGTATTGAGGCCGCCGAGGATATCG
CCTACCAGCTATCCCGGTCCCGTGGTGTCGCCTACTTGCCCAGCGGACAG
AGCACGCTGCTCAATCTGCCATCGACCATCGCGCAGGCAAGCTTTCTAGA
CCTT
FMO02003.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:10:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| l(2)37Cc-RD | 2022 | CG10691-RD | 118..945 | 9..836 | 4140 | 100 | Plus |
| l(2)37Cc-RA | 1325 | CG10691-RA | 102..929 | 9..836 | 4140 | 100 | Plus |
| l(2)37Cc-RB | 1327 | CG10691-RB | 118..945 | 9..836 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:10:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19123121..19123552 | 440..9 | 2160 | 100 | Minus |
| 2L | 23513712 | 2L | 19122422..19122819 | 836..439 | 1990 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:10:51 has no hits.
FMO02003.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:47 Download gff for
FMO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10691-RA | 102..934 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:45 Download gff for
FMO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cc-RB | 118..950 | 9..843 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:02:07 Download gff for
FMO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| l(2)37Cc-RB | 118..950 | 9..843 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:02:07 Download gff for
FMO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19122417..19122817 | 441..843 | 99 | <- | Minus |
| 2L | 19123121..19123552 | 9..440 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:45 Download gff for
FMO02003.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19122417..19122817 | 441..843 | 99 | <- | Minus |
| arm_2L | 19123121..19123552 | 9..440 | 100 | | Minus |
