FMO02004.5prime Sequence
933 bp (933 high quality bases) assembled on 2008-05-06
> FMO02004.5prime
CAGTCGACATGCTTGGTAGAATCGCAGTTTTATTATTGCTCGTCGGTCTT
TTTGGCCCGGAAGTTCGGTCGGCGAAAGTGAATGATGACCAGTGCGGTGC
ATTCGACGAAGATCAGATGCTCAATATGCAAAGCACCTTCGCCATTCCCA
CGGAGCACCAGTGGGTGGCCCGGATAGTGTATGGCAAGGGGTTTGAGGGC
AAGATTCGGGACAATGGATGTCTGGGCGTGCTGGTATCGAAGCGCACTGT
CTTGGCGCCCGCCCACTGTTTTGTCCAGTACAACGGAGTAGCGGAGGCCT
TCTCCGTCCACCTGGGTGTCCACAACAAGAGTGCTCCGGTCGGAGTGCGA
GTCTGCGAAACGGATGGCTATTGCGTGCGTCCGTCGCAGGAAATCAAGCT
GGCCGAGATAGCCATCCATCCGGACTACGACTCGCGAACCTTAAAGAACT
CCCTGGCGGTGCTGACTCTTCAGCGAGACGCAAAGATCTACCCAAATGTA
ATGCCAATTTGCATGCCACCTCCAAGCCTGCTCAACGAGACCCTGGTTGC
TCAGACGTTTGTAGTAGCTGGTCTTCGCGTCTTTGAGGACTTCAGACTAA
AGACCTGGGTAAACACGCTGAGTCGCGGCTTCTGTCAATCGAAGGTCAAG
ACGCTGGTGACCAGCAGCAACACGGTTTGTGGCTACCACAAGCAACCGGT
AGCTTATTACTTGGGCGCACCTCTAGTGGGGTTGCAGAAGAAGGGGCACG
TCACTCAGAACTACTACCTGGTGGGCATCATGATCGACTGGCGCTGGGAG
ACCACCCGCATCATGTCCAGCTTTCTGGGCATACGCAACTACATGGACTT
CATCCGACAGAACTCCAACTCACTGATTGTACGCTCCGCAAGCTTTCTAG
ACCATTCGTTTGGCGCCGCGGGCCCAGGTAAGT
FMO02004.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG31199-RA | 1013 | CG31199-RA | 105..983 | 9..887 | 4350 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 20742830..20743528 | 887..189 | 3450 | 99.6 | Minus |
| 3R | 32079331 | 3R | 20743584..20743765 | 190..9 | 910 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:47:25 has no hits.
FMO02004.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:49 Download gff for
FMO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31199-RA | 98..990 | 1..894 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:26 Download gff for
FMO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31199-RA | 98..990 | 1..894 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:12 Download gff for
FMO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG31199-RA | 98..990 | 1..894 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:12 Download gff for
FMO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 20742823..20743527 | 190..894 | 99 | <- | Minus |
| 3R | 20743585..20743769 | 1..189 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:26 Download gff for
FMO02004.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16568545..16569249 | 190..894 | 99 | <- | Minus |
| arm_3R | 16569307..16569491 | 1..189 | 97 | | Minus |
