FMO02006.5prime Sequence
785 bp (785 high quality bases) assembled on 2008-05-06
> FMO02006.5prime
CAGTCGACATGGCGCGTGTTTTGGTTGGAGTTAAGCGTGTGATCGACTAC
GCCGTCAAGGTGCGCGTCAAGCCCGACAAGACTGGCGTGGTCACCCAGGG
CGTGAAGCACTCGATGAATCCCTTCGACGAGATCGCCGTGGAGGAGGCGG
TGAAGCTGAAGGAGAAAAAGCTGGCCGAGGAGGTGATCGCCGTCTCCGTG
GGCCCGGCCCAGTCGCAGGAGGTGATCCGCACCGCCCTGGCCATGGGCGC
CGATCGCGGCGTCCACGTAGAGATCCCGGCCGCCGAGTACGAGCTTCTGC
AGCCCATCCACGTGTCGAAGATTCTGGCCAAGTTGGCTCTTGACGAAAAA
GCCGACCTGGTCATCCTTGGCAAGCAGGCCATCGACGATGATGCCAACCA
AACGGCCCAGATGACCGCCGCCGTGCTCGACTGGCCGCAGGGCACCTTCT
GCAACAAGATCGAGAAGACAGACGCCGGTCTGACCATCACGCGTGAAATT
GATGGTGGCCTGGAGACAATCAAGACCAAGACCCCGGCTGTGCTGAGCGC
CGATCTCCGGCTGAACACCCCTCGCTACGCCACGTTGCCGAACATCATGA
AGGCCAAGAAGAAGCCGCTGAAGAAGGTTACGGCCAAGGATCTCGGCGTG
GACACCTCGCCCCGCATCGAGGTCATCTCCGTGGAGGATCCTCCTGTGCG
CCAGGCCGGCGCCACCGTCGCCGACGTGGATGCCCTGGTGGCCAAGCTAA
AGGAGGGCGGCCACATCGCAAGCTTTCTAGACCAT
FMO02006.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7834-RB | 1116 | CG7834-RB | 5..763 | 9..767 | 3795 | 100 | Plus |
| CG7834-RA | 1021 | CG7834-RA | 44..802 | 9..767 | 3795 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29801952..29802665 | 767..54 | 3555 | 99.9 | Minus |
| 3R | 32079331 | 3R | 29802787..29802840 | 62..9 | 270 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:54:20 has no hits.
FMO02006.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:51 Download gff for
FMO02006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RB | 1..763 | 6..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:38 Download gff for
FMO02006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 37..802 | 2..767 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:43:57 Download gff for
FMO02006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7834-RA | 37..802 | 2..767 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:43:57 Download gff for
FMO02006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29801952..29802659 | 60..767 | 100 | <- | Minus |
| 3R | 29802790..29802846 | 1..59 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:38 Download gff for
FMO02006.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25627674..25628381 | 60..767 | 100 | <- | Minus |
| arm_3R | 25628512..25628568 | 1..59 | 93 | | Minus |
