FMO02013.5prime Sequence
931 bp (931 high quality bases) assembled on 2008-05-06
> FMO02013.5prime
CAGTCGACATGATTATTCCAAAAATGTCGAGGCATGCTCTGATAGGTGGT
GGCACTGGCTTCATCGGTCGCAACCTGGCTAACCATTTGACCAAAAAGGG
TTACGATGTGACGGTGATCTCCCGCATGCCAGGTGCGAAGCGTATCACCT
GGCACGAGCTGGAGAAGAATGGTATTCCCGGATCCGTAAACGCCGTGGTA
AATGCCACGGGCCAGAACACATTGGATCCAACGAGACGCTGGACTCCAGG
ATTCCAGCAGAATGTGTGGAACTCGCGAATCAACTCCTCAAAAACTTTGG
CTCAGGCTATTAAGTCGGCTCCCCAGGTCTCATCTTTCGTGAATCTATGC
GGTGTGAGTCACTATAAACCCTCGGAGTCCAAGGTTTACACCGAGGAGGA
TCAGGTGCAAGGATTCGACTACATGTCCAGGTTGTGCTTGGCCTGGGAGG
AGGCTGCACACACTGGTAGTGAGCAGGATTGTAAAACCACCATCCTGCGG
TGTGGCGCTGTTGTGGGTCATGGCGGGGGCATGGTTCAGTCCATGTGGCT
GCCCTTTAAGTTTGGCGTAGGAGGACCATTGGGTAATGGAAACCAAATAA
TGCCATGGATACACCTGCACGATCTGTGCAGCTTGATACAGTACATCATA
GAGAAACCAGTGCCAGGAGTGGTCAATGCGGTGGCCCCAGAAATAACCAG
CAATTTGGAGTTTAGCAAAGCCTTTGCCAAAGCACTTCATCGCCCGTGTA
TCTTCGGCGTTCCAGAGTTTGTTGTCCAAGCCATCTTTGGACCAGAGCGG
GCAGCTCTGGTTTTAAGTGGTGCCAAGGTCAAGCCACAGAAAGCTCTATC
ATCCGGATTTAAATTTCATATCCCAGCGTCAAGAGGCTGTGACGCAACTG
ACCCTCAAAGGAGCAAGCTTTTCTAGACCAT
FMO02013.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8768-RA | 1210 | CG8768-RA | 72..977 | 9..912 | 4480 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12692081..12692525 | 488..44 | 2225 | 100 | Minus |
| 2R | 25286936 | 2R | 12691791..12692022 | 720..489 | 1160 | 100 | Minus |
| 2R | 25286936 | 2R | 12691541..12691735 | 912..720 | 875 | 99 | Minus |
| 2R | 25286936 | 2R | 12692581..12692619 | 47..9 | 195 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:54:27 has no hits.
FMO02013.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:58 Download gff for
FMO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8768-RA | 66..978 | 4..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:43 Download gff for
FMO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8768-RA | 68..980 | 4..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:00 Download gff for
FMO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8768-RA | 68..980 | 4..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:00 Download gff for
FMO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12691538..12691735 | 720..916 | 97 | <- | Minus |
| 2R | 12691792..12692022 | 489..719 | 100 | <- | Minus |
| 2R | 12692081..12692523 | 46..488 | 100 | <- | Minus |
| 2R | 12692583..12692623 | 4..45 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:43 Download gff for
FMO02013.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8579043..8579240 | 720..916 | 97 | <- | Minus |
| arm_2R | 8579297..8579527 | 489..719 | 100 | <- | Minus |
| arm_2R | 8579586..8580028 | 46..488 | 100 | <- | Minus |
| arm_2R | 8580088..8580128 | 4..45 | 92 | | Minus |
