FMO02016.5prime Sequence
602 bp (602 high quality bases) assembled on 2008-05-06
> FMO02016.5prime
CAGTCGACATGACGACGATTCGCAAGAAATTGGTAATTGTCGGCGACGGT
GCCTGCGGTAAAACTTGCCTTCTGATTGTCTTCAGCAAAGATCAGTTCCC
CGAGGTCTATGTGCCCACCGTATTCGAGAATTATGTGGCCGACATCGAGG
TGGATGGCAAACAGGTGGAGCTGGCCTTGTGGGATACGGCCGGGCAGGAG
GACTACGACAGACTACGACCGCTGAGCTATCCCGACACTGACGTCATACT
GATGTGTTTCTCAGTGGATTCACCCGATTCGCTAGAAAATATTCCTGAAA
AATGGACCCCAGAGGTCAAACACTTTTGTCCAAATGTTCCAATCATTTTG
GTAGGAAATAAGAAAGATTTGCGAAATGATCCCAACACAATTCGGGATCT
AGCAAAAATGAAGCAGGAGCCGGTGAAGCCGCAGGAGGGTCGCGCCATGG
CCGAGAAGATTAATGCCTTTGCCTATTTGGAGTGTTCGGCTAAGTCCAAG
GAGGGTGTGCGAGATGTTTTCGAGACGGCAACTAGGGCCGCGCTGCAAGT
CAAAAAGAGGAAGAAGACCAGATGCCTTTTGCTCGCAAGCTTTCTAGACC
AT
FMO02016.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rho1-RA | 1288 | CG8416-RA | 272..847 | 9..584 | 2880 | 100 | Plus |
| Rho1-RG | 1977 | CG8416-RG | 221..796 | 9..584 | 2880 | 100 | Plus |
| Rho1-RF | 1971 | CG8416-RF | 215..790 | 9..584 | 2880 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 16105859..16106048 | 395..584 | 950 | 100 | Plus |
| 2R | 25286936 | 2R | 16103619..16103776 | 9..166 | 790 | 100 | Plus |
| 2R | 25286936 | 2R | 16105030..16105184 | 162..316 | 775 | 100 | Plus |
| 2R | 25286936 | 2R | 16105715..16105798 | 313..396 | 420 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:23 has no hits.
FMO02016.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:02 Download gff for
FMO02016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8416-RE | 36..620 | 1..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:35 Download gff for
FMO02016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rho1-RF | 209..793 | 1..588 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:46 Download gff for
FMO02016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rho1-RF | 209..793 | 1..588 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:46 Download gff for
FMO02016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 16103613..16103774 | 1..164 | 97 | -> | Plus |
| 2R | 16105033..16105182 | 165..314 | 100 | -> | Plus |
| 2R | 16105717..16105797 | 315..395 | 100 | -> | Plus |
| 2R | 16105860..16106051 | 396..588 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:35 Download gff for
FMO02016.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11991118..11991279 | 1..164 | 97 | -> | Plus |
| arm_2R | 11992538..11992687 | 165..314 | 100 | -> | Plus |
| arm_2R | 11993222..11993302 | 315..395 | 100 | -> | Plus |
| arm_2R | 11993365..11993556 | 396..588 | 98 | | Plus |
