FMO02019.5prime Sequence
899 bp (899 high quality bases) assembled on 2008-05-06
> FMO02019.5prime
CAGTCGACATGTGGGGCGCTATTGCAGCGATCACAGCTCTGGCAATTGGA
GTCCTCTGTTCTCTGGGCAATGGAGAGTACTTGGAACCGAGGTGCGGGCT
AACTGCAAATACTATCGCTTTTAAAATAATTGGTGGCAGAGATGCGATCA
TAAACTCAAATCCGTGGATGGCCTACATCCATTCCTCCGTCAAATTAATC
TGCGGAGGAACTCTCATTACCCAGCGGTTTGTCCTAACAGCAGCGCATTG
TGTTAACGAAGGAAGTGCGGTAAAGGTGCGACTCGGTGAGTACGATGATA
CTGCGACAGAGGACTGCAACAGCAAGATCTGCATCCCAAGGGCTGAGGAG
CACGATGTGGACATGGCCTTCCGGCATGGAAAGTTCTCTGAGATCAAAAA
CCTGAACGACATCGCGCTCCTTCGCTTGGCCAAATTTGTGACTTTCAAAG
CTCACATCTCGCCCATTTGCATCATTTTGGGTACCTCCAAGAGGGAATTA
GTCGATAGCATAGAATGGTTTGTTGCCACCGGTTGGGGCGAGACTAGAAC
ACACAGGACACGAGGTGTTCTGCAGATCACCCAGCTCCAGCGCTATAATT
CATCCCAGTGCATGCAAGCTCTTGGCAGGTTAGTGCAGCAGAACCAAATT
TGCGCCGGACGCCTTGGATCCGATACGTGCAACGGAGACTCCGGCGGTCC
GCTCTTCCAGACTGTGCGCCACATGGACAAAATGCGTCCCGTGCAATTCG
GAGTCGTCAGCTACGGCAGCAGGGAGTGCTCCGGAATCGGTGTCTATACG
GATGTGTACAGCTACGCCGATTGGATCGCAACCGTGGTGCAGCAGAACAC
CCATGTGCCCGCACCCATAATGCCAAACATTGCAAGCTTTCTAGACCAT
FMO02019.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG30090-RA | 999 | CG30090-RA | 23..895 | 9..881 | 4365 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15690478..15690910 | 449..881 | 2165 | 100 | Plus |
| 2R | 25286936 | 2R | 15689848..15690065 | 9..226 | 1090 | 100 | Plus |
| 2R | 25286936 | 2R | 15690254..15690432 | 272..450 | 895 | 100 | Plus |
| 2R | 25286936 | 2R | 15690121..15690166 | 226..271 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:20:46 has no hits.
FMO02019.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:07 Download gff for
FMO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30090-RA | 2..885 | 7..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:00 Download gff for
FMO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30090-RA | 11..902 | 1..889 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:47 Download gff for
FMO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG30090-RA | 11..902 | 1..889 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:47 Download gff for
FMO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15690480..15690917 | 451..889 | 99 | | Plus |
| 2R | 15689836..15690064 | 1..225 | 98 | -> | Plus |
| 2R | 15690121..15690166 | 226..271 | 100 | -> | Plus |
| 2R | 15690254..15690432 | 272..450 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:00 Download gff for
FMO02019.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11577341..11577569 | 1..225 | 98 | -> | Plus |
| arm_2R | 11577626..11577671 | 226..271 | 100 | -> | Plus |
| arm_2R | 11577759..11577937 | 272..450 | 100 | -> | Plus |
| arm_2R | 11577985..11578422 | 451..889 | 99 | | Plus |
