FMO02020.5prime Sequence
1212 bp (1045 high quality bases) assembled on 2008-05-06
> FMO02020.5prime
CAGTCGACATGCCGCGACGTAAGCCCACCATTAAGACCGATGTGATCGGG
GATCTGGACCTCAGTCCAGAGGTCGCCATCGATGACTATCGCGTCTCTCG
CCAGCAGGACCAATTCTTCGTGAAACCGCCCAATTGGGATTCGGCCGGGG
ATAACATCGAGATGCTGTACATAGCCAATCTCCGGGAGTACGACGCCATG
AAGCAGGTTCAGATCCAGCTACTCAAAGATGCCAAGCGGCAAGCCGCATT
AAATGTGCAGCGCATTCGCAAGATGTACAAGATTCAGGAGCGCCTGCGCA
AACGCTTCGTCGAGGTGAATGGATTCATCAAGGATTGTGCGGACAAAAAG
CGCAGTGCGGATAAGTCGATTCGCGAGGAGACCGTTCTCCACGCGGAGGT
CACCAAGGAGATAGACGAGTTCAAGACCTCCATTGCCGAACTGAGCACCT
TTCGCAATGCGCTCAAGGCCACGGTGGCTCAGTTTCAGCCATACGAGAGG
GTCCTGGAGGAGGTAGTCGAGGTGTCGGACATCTTCATCTCAACGAAAGA
CTGCATCGATCGATGTGACGCTCTAATGTTGGCCCAGGTGGAGATCAATA
AGCTGGAGAGCCAGAAACTCAACGAGATCGAGGAGATGCGCCTGCGAATG
GTTCAGATCACCAGCGAGGCGGCCTTGACCGTTTTGGGCCTCAAAAACGA
TCTGGCCCGTTTGGATCGTTCCTATGTCAGCTCGCGGGCCACTTGCCTCA
AGTGGGAAAAGATACTAAGTGCCTGCAAGGACACCACGTCGCTCTACAAC
CTGGACAAGGAGCGCATGTTTGATGGCATTCAAATCCTGTACCGCATGCT
CTGCAAACGTCGAGACATTGTTCCCAGCTACCACAGCTATGAGATCGACA
AAATCATGAGCTTCATCATGCGCGAAATAAGTCTTCTTTCATCGGTCCTC
CAGGAATTGGAGTCCATAAGGCGATAAAGTCGGCGCTGGACGTATGTGCG
CAAGCTTTCTAGACCATTCGTTTGGCCGCGCGGGCCCAGGTAAGTGTCAT
AATCATAATCATATCATAATTCATAATCCACACTAGCTAGAAATCCTGAT
CATGACTAGGCTGATCCTACACAATAAAAACGCCCTGGCGAACGACGTTC
TGACAAATTCGATGGGAATTTCGGAGGTCCTATATACTGAATCCTACTAT
ACCACGGGGAGT
FMO02020.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:54:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10750-RA | 1175 | CG10750-RA | 119..1111 | 9..999 | 4915 | 99.8 | Plus |
| CG10750-RB | 1175 | CG10750-RB | 119..1111 | 9..999 | 4885 | 99.6 | Plus |
| CG17564-RB | 1305 | CG17564-RB | 471..905 | 273..707 | 420 | 74 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:54:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 19300548..19301002 | 122..576 | 2275 | 100 | Plus |
| 2L | 23513712 | 2L | 19301058..19301345 | 577..864 | 1440 | 100 | Plus |
| 2L | 23513712 | 2L | 19301398..19301536 | 863..999 | 600 | 97.1 | Plus |
| 2L | 23513712 | 2L | 19300373..19300486 | 9..122 | 570 | 100 | Plus |
| 2L | 23513712 | 2L | 19298996..19299291 | 568..273 | 220 | 71.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:54:30 has no hits.
FMO02020.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:08 Download gff for
FMO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10750-RA | 68..1060 | 9..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:08:46 Download gff for
FMO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10750-RA | 119..1111 | 9..999 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:44:01 Download gff for
FMO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10750-RA | 119..1111 | 9..999 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:44:01 Download gff for
FMO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 19300373..19300485 | 9..121 | 100 | -> | Plus |
| 2L | 19300548..19301002 | 122..576 | 100 | -> | Plus |
| 2L | 19301058..19301345 | 577..864 | 100 | -> | Plus |
| 2L | 19301400..19301536 | 865..999 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:08:46 Download gff for
FMO02020.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 19300373..19300485 | 9..121 | 100 | -> | Plus |
| arm_2L | 19300548..19301002 | 122..576 | 100 | -> | Plus |
| arm_2L | 19301058..19301345 | 577..864 | 100 | -> | Plus |
| arm_2L | 19301400..19301536 | 865..999 | 98 | == | Plus |
