FMO02022.5prime Sequence
1209 bp (1015 high quality bases) assembled on 2008-05-06
> FMO02022.5prime
CAGTCGACATGAGAAGGCACTTGCGGGCAAGTCTTTGGATCCTTTGTTTG
GCCACCATGGCGTTTTCCATCCTTGCGGCAGTAAATACTTCGCCCAAACC
AACGCTGACTTCGGCGTTTAGTGGAAAAGCTGGCACCACTGCCGTGAAGG
CGAATAAGACGACGGGTGAGCTGCTGCCCATGGTCATTAACACTTGGAAC
TTCACGGCTGCCAATGTGCTCGCCTGGCGAATCCTGAAGCAAAGCAAGGG
TGGACTCCGGCAGACGCGGAATGCGGTAGTGGAGGGCTGCTCGAAGTGTG
AGAAACTCCAGTGTGACCGAACGGTGGGCTATGGCGGATCGCCGGACGAG
TTGGGCGAAACCACACTGGATGCCATGGTCATGGACGGGGCCACCATGGA
TGTGGGGGCAGTGGCTGGTCTGCGACGCATTAAGGATGCCATTAAGGTAG
CCCGGCATGTTCTGGAACACACGCAGCACACCATGCTGGTGGGTGATGCG
GCGTCAGCTTTCGCCAATGCTATGGGATTCGAATCAGAGTCGCTGGTCAC
GCCGGAGTCGAAGGACATGTGGTTACAGTGGACGGCTGAGAACTGCCAGC
CAAACTTCTGGAAGAACGTTCACCCGGATCCCAAGGTCTCTTGCGGCCCG
TATAAGCCGCGGCCGACTCCGCTGACCCGCTGGAAGGAGGACCGTGCCCG
CAATGAGTATGAGATCGGACGCAAGAACCACGATACCATCGGCATGATCG
CCATCGACGTGGAAAGCAACATCCACGCCGGCACCTCCACCAACGGGGCG
CGGCACAAGATTCCCGGACGGGTCGGCGACTCCCCCATTCCGGGTGCTGG
CGCTTATGCAGACAACGAGGTGGGTGCAGCCGTGGCAACCGGAGATGGAG
ATGTGATGATGCGCTTCCTGCCCTCCTGCTAGCGGGGAGACCATGCGGCC
GGGAAACCTCCGGCTGAGCAGCTCAGAGGGCCTTCGCCGCATCCTCAGCA
CACAGGATTTCATGGGTGCCTCTCATCGCCGTAGATCGGCTGGGTTAATA
TGGCGCTGCCTGCTACGGACTGACCGATCCATTATGGGTTAGCAGTCCAG
CCGGAGCGAATGCCTACCGCCTGACGTCAATGCATCGTTCAGACAAGATA
ATTCCTGGCGTTGCCAACCATCTGAACAACTTTCTTTGGGCGACGCGCGC
ACGAGGTAT
FMO02022.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1827-RD | 1341 | CG1827-RD | 100..1214 | 8..1112 | 5135 | 98 | Plus |
| CG10474-RA | 1273 | CG10474-RA | 607..852 | 726..968 | 300 | 75.6 | Plus |
| CG10474-RA | 1273 | CG10474-RA | 256..419 | 366..529 | 235 | 77 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 9589314..9590316 | 120..1112 | 4315 | 97.4 | Plus |
| 2R | 25286936 | 2R | 9589149..9589262 | 8..121 | 570 | 100 | Plus |
| 2R | 25286936 | 2R | 19285862..19286061 | 925..726 | 250 | 75 | Minus |
| 2R | 25286936 | 2R | 19286249..19286412 | 529..366 | 235 | 76.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:20 has no hits.
FMO02022.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:04:55 Download gff for
FMO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1827-RC | 44..1172 | 8..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:33 Download gff for
FMO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1827-RD | 100..1228 | 8..1123 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:45 Download gff for
FMO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1827-RD | 100..1228 | 8..1123 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:45 Download gff for
FMO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 9589149..9589262 | 8..121 | 100 | -> | Plus |
| 2R | 9589316..9590330 | 122..1123 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:33 Download gff for
FMO02022.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 5476654..5476767 | 8..121 | 100 | -> | Plus |
| arm_2R | 5476821..5477835 | 122..1123 | 97 | | Plus |
