FMO02025.5prime Sequence
740 bp (740 high quality bases) assembled on 2008-05-06
> FMO02025.5prime
CAGTCGACATGATCTGGGACTTCTTTACCTTTATACGCGGAGCCACCGAG
TTCAGTGCCACTGCGCTACTGATTTTGCTCGGTTGCATGGGAGACTCAAC
GAACCAAGGTGGTGAGAGCAAATTCTTGGTGGCCAGCGTTCACTATGGCC
TGACGGTGATGGTGGTGATGCACGTGTTTGGCTTCGTATCCGGAGCCCAT
TCGAATCCATGCATCTCGATCTCATGCTACTTGATGGGCTACATCGCCCT
GGAAGTGATGATGATGTACGTGGTGTGTCAGATGGCCGGTGCTTTCCTTG
GTTACTTCCTGCTAATGCAACTGCTGCCCAAGGAGCTGGTGGACAAAAGC
AAGCCAGGCATTTGCCTGGTACAACCGATGGACACTCTGTCCACATACCA
GGTCGTCATCATCGAGTGCCTGCTGACCGCGGTCCTCGTGCTCGGATGGT
GCTCCTTGTGGGACGTGCGAAACGGAAGGTTCCTCGACTCGGTCGCCATT
CGCATGGGTCTCCTCGTGATCGCTTGCAGTTTCGCAGGGATTCAACTAAC
TGGAGCCAGTATGAACCCCGCCAAGACATTGGTGCCTGCCATATTCTACG
GCAGTCCGAATTCGGTTCTAATGCAGCTGACTGGCCAGATCCTGGCCGCC
ATCATGGTGCCCTTCGTGTGGAATCATGCGTATACGCCACCTTATAAGCC
CTTGGAAATTCCAGTGTGCAACGCAAGCTTTCTAGACCAT
FMO02025.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5398-RA | 938 | CG5398-RA | 133..846 | 9..722 | 3570 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23602898..23603302 | 135..539 | 2025 | 100 | Plus |
| 2R | 25286936 | 2R | 23603366..23603549 | 539..722 | 920 | 100 | Plus |
| 2R | 25286936 | 2R | 23602717..23602844 | 9..136 | 640 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:07:26 has no hits.
FMO02025.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:14 Download gff for
FMO02025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5398-RA | 125..852 | 1..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:37 Download gff for
FMO02025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5398-RA | 125..852 | 1..729 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:48 Download gff for
FMO02025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5398-RA | 125..852 | 1..729 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:48 Download gff for
FMO02025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23603367..23603555 | 540..729 | 98 | | Plus |
| 2R | 23602709..23602844 | 1..136 | 97 | -> | Plus |
| 2R | 23602900..23603302 | 137..539 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:37 Download gff for
FMO02025.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19490890..19491078 | 540..729 | 98 | | Plus |
| arm_2R | 19490232..19490367 | 1..136 | 97 | -> | Plus |
| arm_2R | 19490423..19490825 | 137..539 | 100 | -> | Plus |
