FMO02026.5prime Sequence
899 bp (899 high quality bases) assembled on 2008-05-06
> FMO02026.5prime
CAGTCGACATGTTGGCTCTGGCCAGGAATTCGTGGTGTGGCCAATTGCTG
TGTCGCGTGGCGAACATCGAAGCCCGCTGCCCGTTCTCGAAGTCATCATC
CGGCGGAAAGCAGGCCGAGAAGAAGGGCAAGTACAGGATTGTGATGGTTC
GTCATGGAGAGTCCGAATGGAATCAGAAGAACCTATTCTGCGGATGGTTC
GATGCCAAGCTATCGGAGAAGGGGCAGCAGGAGGCCTGTGCCGCTGGCAA
AGCGCTCAAAGATGCCAAAATTGAGTTCGATGTGGCCCACACCTCGGTGC
TGACCAGAGCCCAGGAGACACTCAGGGCCGCCCTAAAGTCCAGCGAGCAC
AAGAAGATTCCGGTGTGCACCACGTGGCGCCTCAACGAGCGCCACTACGG
CGGACTGACGGGACTGAATAAGGCCGAGACCGCCAAGAAGTTCGGCGAGG
AGAAGGTTAAGATCTGGCGCCGCAGCTTTGACACCCCACCGCCGCCAATG
GAGAAGGATCACGAGTACTACGCCTGCATTGTTGAGGATCCGCGCTACAA
GGACCAACTGAAGCCGGAGGAGTTCCCCAAATCCGAGTCCCTCAAGCTCA
CCATCGAGCGCACCTTGCCCTACTGGAACGAGGTCATAGTGCCCCAGATC
AAGGATGGAATGCGTGTCCTGATCGCCGCCCACGGCAACAGCCTGCGGGG
CGTGGTCAAGCACTTGGAATGCATCTCTGACAAGGACATTATGAGCCTCA
ACCTGCCCACTGGCATTCCTTTCGTCTACGAACTAGACGAGAGCCTCAAG
CCTTTGGCCACGTTGAAGTTCCTCGGCGATCCGGAGACGGTGAAGAAGCA
ATGGAGTCGTGGCCAACCAGGGCAAAGCCAAGGCAGCTTTCTAGACCAT
FMO02026.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pglym87-RA | 1085 | CG17645-RA | 53..928 | 9..882 | 4330 | 99.8 | Plus |
| Pglym78-RC | 1042 | CG1721-RC | 115..873 | 126..882 | 1200 | 77.7 | Plus |
| Pglym78-RB | 1022 | CG1721-RB | 95..853 | 126..882 | 1200 | 77.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:21:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12231802..12232677 | 882..9 | 4280 | 99.8 | Minus |
| 3R | 32079331 | 3R | 29149011..29149498 | 225..712 | 790 | 77.5 | Plus |
| 3R | 32079331 | 3R | 29149594..29149696 | 746..848 | 215 | 80.6 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:22:00 has no hits.
FMO02026.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:15 Download gff for
FMO02026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17645-RA | 77..952 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:35:45 Download gff for
FMO02026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym87-RA | 53..928 | 9..882 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:06 Download gff for
FMO02026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pglym87-RA | 53..928 | 9..882 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:06 Download gff for
FMO02026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12231802..12232677 | 9..882 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:35:45 Download gff for
FMO02026.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8057524..8058399 | 9..882 | 99 | | Minus |
