FMO02027.5prime Sequence
566 bp (566 high quality bases) assembled on 2008-05-06
> FMO02027.5prime
CAGTCGACATGAAACGCCTGAGCGACGAACGTGCCAAGATCTTGTTCGAG
CACCTGTCCAAATACATTGGCACAAATGTGAAGCATTTGATTGACCGGCC
AGATGGAACATATTGCTTTCGGGAGCACAAGGATCGGGTCTACTACGTCT
CGGAGCGGATTTTGAAGCTGAGCGAGTGCTTCGGCTACAAGCAGCTGGTG
TGCGTGGGCACCTGCTTCGGCAAGTTCTCCAAGACCAACAAACTGAAGTT
CCATATCACGGCGCTCTACTACTTGGCGCCCTACGCCCAGTACAAGGTGT
GGGTGAAGCCCTCCTTCGAGCAGCAGTTTCTCTACAGCAACCACATACCC
AAAACCGGACTGGGTCGCATCACGGAGAACGCCGGCCAGTACCAGGGCGT
GGTGGTTTACTCCATGAACGACCTGCCTCTGGGCTTCGGCGTCCTGGCGC
GTTCCACAACGGACTGCAAGACCGCCGATCCCATGACCACCGTATGCTTT
CATCAGTCGGATATCGGCGAATATATTCGCGCCGAGGACACGCTCTTTGC
AAGCTTTCTAGACCAT
FMO02027.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7006-RA | 708 | CG7006-RA | 89..628 | 9..548 | 2625 | 99.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24850822..24851305 | 65..548 | 2345 | 99 | Plus |
| 3R | 32079331 | 3R | 24850715..24850770 | 9..64 | 280 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:47:45 has no hits.
FMO02027.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:16 Download gff for
FMO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 84..623 | 9..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:33 Download gff for
FMO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..628 | 9..548 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:21 Download gff for
FMO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7006-RA | 89..628 | 9..548 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:19:21 Download gff for
FMO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24850715..24850770 | 9..64 | 100 | -> | Plus |
| 3R | 24850822..24851305 | 65..548 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:33 Download gff for
FMO02027.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20676437..20676492 | 9..64 | 100 | -> | Plus |
| arm_3R | 20676544..20677027 | 65..548 | 98 | | Plus |
