Clone FMO02029 Report

Search the DGRC for FMO02029

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:20
Well:29
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG11444-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO02029.5prime Sequence

671 bp (617 high quality bases) assembled on 2008-05-06

> FMO02029.5prime
CAATCGACATGCCACGAGGAAAGTTCGTCGACCACAAAGGTCGCAGTCGC
CATTTCACATCTCCCGAGGAACTGCAACAGGAATCGGAGGAGGATAGCGA
CCAGACCAGCGGCTCGGGATCAGATAGCGACGATAAAGACGCTGCCGGCG
GCAAAGCCAGTTCCTCTGCGTCCAAAGCCAAGGCACCCGCCACACGTAAA
GCGCCCGTGAATCGCAATCAAAAGTCTCGATCAGCGGCGGGCGCCGGTGC
GGCAAGTTCCTCGGAATCGGAGTCTGGCGAGGATTCCGACGATGACTCCG
AAGCGGAAGCGCGCGATGCCAAGAAGGGCGTGGCCTCACTCATCGAAATC
GAGAATCCCAACCGGGTGACCAAGAAGGCCACACAAAAGCTATCGGCCAT
CAAGCTGGACGACGGGCCAGCCGGTGCCGGCGGTAATCCCAAGCCGGAGC
TTTCTCGCCGCGAACGCGAACAGATCGAAAAGCAGAGAGCGCGCCAGCGT
TACGAGAAACTCCATGCTGCTGGTAAAACCACCGAGGCTAAGGCCGATCT
GGCCAGATTGGCTTTGATCCGGCAGCAGCGCGAGGAGGCGGCCGCCAAGC
GGGAGGCGGAAAAGAAGGCAGCCGATGTGGGCACCAAAAAACCGGGTGCC
AAGGCAAGCTTTCTAGACCAT

FMO02029.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:46
Subject Length Description Subject Range Query Range Score Percent Strand
CG11444-RB 1282 CG11444-RB 416..1061 8..653 3200 99.7 Plus
CG11444-RA 1081 CG11444-RA 215..860 8..653 3200 99.7 Plus
CG4438-RB 922 CG4438-RB 571..741 483..653 405 82.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:45
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 4553338..4553983 653..8 3200 99.7 Minus
2L 23513712 2L 9397180..9397350 653..483 405 82.5 Minus
2L 23513712 2L 9397617..9397747 138..8 310 82.4 Minus
2L 23513712 2L 9397397..9397498 400..299 255 83.3 Minus
Blast to na_te.dros performed on 2014-11-28 20:22:46 has no hits.

FMO02029.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:18 Download gff for FMO02029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 356..1008 1..653 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:30 Download gff for FMO02029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 208..860 1..653 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:03 Download gff for FMO02029.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11444-RA 208..860 1..653 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:03 Download gff for FMO02029.5prime
Subject Subject Range Query Range Percent Splice Strand
X 4553338..4553989 1..653 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:30 Download gff for FMO02029.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 4447371..4448022 1..653 99   Minus