FMO02030.5prime Sequence
470 bp (470 high quality bases) assembled on 2008-05-06
> FMO02030.5prime
ATAATACGAAGTTATCAGTCGACATGGGCAAGCCAAGAGGTCTGCGCACT
GCCAGGAAGCATGTGAACCACCGTCGCGACCAGCGTTGGGCCGACAAGGA
CTACAAGAAGGCTCATTTGGGCACCAGATGGAAGGCTAATCCCTTCGGAG
GTGCTTCCCACGCCAAGGGAATCGTCCTGGAGAAGGTCGGCGTCGAGGCC
AAGCAGCCTAACTCTGCCATCCGCAAGTGCGTGAGGGTGCAGCTCATCAA
GAACGGCAAGAAGATCACCGCCTTCGTGCCCCGTGACGGTAGCTTGAACT
ACATTGAGGAGAACGACGAGGTCCTGGTTGCCGGTTTCGGTCGTAAGGGT
CATGCCGTCGGTGATATTCCCGGTGTGCGCTTCAAGGTTGTCAAGGTCGC
CAACGTCTCCCTGTTGGCCCTCTACAAGGAGAAGAAGGAACGCCCAAGAT
CTGCAAGCTTTCTAGACCAT
FMO02030.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS23-RA | 865 | CG8415-RA | 95..523 | 24..452 | 2145 | 100 | Plus |
| RpS23-RB | 553 | CG8415-RB | 46..474 | 24..452 | 2145 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14215438..14215702 | 452..188 | 1325 | 100 | Minus |
| 2R | 25286936 | 2R | 14215951..14216111 | 187..27 | 805 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:40 has no hits.
FMO02030.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:20 Download gff for
FMO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8415-RA | 95..523 | 24..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:00 Download gff for
FMO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS23-RB | 46..474 | 24..452 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:02 Download gff for
FMO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS23-RB | 46..474 | 24..452 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:02 Download gff for
FMO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14215438..14215702 | 188..452 | 100 | <- | Minus |
| 2R | 14215951..14216114 | 22..187 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:00 Download gff for
FMO02030.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10102943..10103207 | 188..452 | 100 | <- | Minus |
| arm_2R | 10103456..10103619 | 22..187 | 98 | | Minus |
