FMO02033.5prime Sequence
910 bp (910 high quality bases) assembled on 2008-05-06
> FMO02033.5prime
CAGTCGACATGGCCAACATTGCTAAGATCTTCGCTAGCCGCGCCCAGTGC
GTCCTGCAGGCAGCCGCCCGTCAGCCACAGGTGGCCACCCGTTTCAGCAG
CTCCTCCACCAACAACAACTGGGAGTACATCAAGACCGAAGTGGCCGGCG
AGGGCAAGAACGTAGGCGTGATCACCCTGAACCGCCCCAAGGCCCTGAAT
GCCCTCTGCAATGGCCTGATGAAGGAGCTGTCCACCGCATTGCAGCAATT
CAGCAAGGATAAGACCATCTCCGCCATCGTTTTGACGGGCAGCGAGAAGG
CCTTCGCCGCTGGCGCTGATATTAAGGAGATGGTGGGCAACACCTACTCG
CAGTGCATCCAGGGCAACTTCTTGAACGACTGGACAGAGGTGGCCCGCAC
CCAGAAGCCCATCATTGCTGCCGTGAATGGTTACGCCTTGGGCGGTGGCT
GTGAGCTGGCCATGATGTGCGACATCATATATGCCGGTGACAAGGCCAAG
TTTGGTCAGCCTGAAATTGCCCTGGGCACCATTCCCGGTGCCGGTGGCAC
CCAGCGTCTGACCCGCGTCGTTGGCAAGTCCAAGGCCATGGAAATGTGCC
TCACCGGCAATATGATCGGCGCCCAGGAGGCTGAGAAGCTGGGTCTGGCC
AGCAAGGTGGTGCCCGCCGACCAGTTATTGGGCGAGGCCGTCAAGCTGGG
CGAGAAGATCGGCACCCACTCCAATCTGATCGTGCAGCTGTGCAAGGAGG
CGGTTAACACGGCTTACGAGACCACTCTCCAAGAGGGCCTGAAGTTCGAG
CGTCGCACCTTCCATGCCACGTTCTCCACGGCCGATCGCAAGGAGGGCAT
GACCGCTTTCGCCGAGAGCGCCCTGCCAAGTTTACCAACGAGGCAAGCTT
TCTAGACCAT
FMO02033.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:14:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6543-RA | 1051 | CG6543-RA | 61..945 | 9..892 | 4400 | 99.9 | Plus |
| CG6543-RB | 1124 | CG6543-RB | 134..1018 | 9..892 | 4400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:14:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 13853180..13853905 | 831..106 | 3630 | 100 | Minus |
| 2R | 25286936 | 2R | 13854102..13854198 | 105..9 | 485 | 100 | Minus |
| 2R | 25286936 | 2R | 13853053..13853116 | 892..830 | 270 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:14:52 has no hits.
FMO02033.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:23 Download gff for
FMO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-RA | 69..965 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:27 Download gff for
FMO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-RB | 125..1021 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:15 Download gff for
FMO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6543-RB | 125..1021 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:15 Download gff for
FMO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 13853049..13853115 | 831..896 | 95 | <- | Minus |
| 2R | 13853181..13853905 | 106..830 | 100 | <- | Minus |
| 2R | 13854102..13854207 | 1..105 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:27 Download gff for
FMO02033.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 9740554..9740620 | 831..896 | 95 | <- | Minus |
| arm_2R | 9740686..9741410 | 106..830 | 100 | <- | Minus |
| arm_2R | 9741607..9741712 | 1..105 | 96 | | Minus |
