FMO02035.5prime Sequence
1228 bp (1012 high quality bases) assembled on 2008-05-06
> FMO02035.5prime
CAGTCGACATGACAGGCAAACTTCTACTGGCCACGATCCTGTGCCTAATG
GGCGGCCAAGCCTTGGGCGATGCGATTCTGGAAGGAAACTACAACGTTAC
GGCCGTCTGCACGGCGGTTAAGGTCGGAACGCAGCTGGGCAGCATCGAAT
CCTGCCAGACGTACTACGTCTGCCAGTCCACCGGACCCGTGCAGTCCTCG
TGCCAATCAGGCTACTCGTACGACTACAAGAGATCCTCCTGCTATCCAAG
CAGCGAGGTGGACTGCTATTGGGGCGTTGAGAATCCCTGTGCTGGCAAGA
ATAACACCTGGGTGCCAAACACTGCCGTTTGTGGTGGATGGTTCTACTGC
CTTGAGGGCAAGTCGGCGGGCTCCGGAAACTGCCCGGTGAACCAGAAATT
CGATACCACCACACTCGCCTGCGTTTATGGAACCTGCTCCAACACTCAAG
GTACTAATGAAACCGTGCTAGAATCACTATGCGATGTCGTGCCACCTGGC
CAATATTTCGGCGATACTGAGAGCTGCTCCACCTGGCACTACTGCGAGTC
CACCTCCACCGGACTCGTTTTGCAGTCGGGTAAATGCTCTGCAAACAATC
AAACTGCATACAACGTGCTCGCCAATCAATGTACCTACGAAAGTGCCTCC
GTCTGCAGCCGTGTGACCAACATTCCGCTGAGCGATGCCGCAGTTTCCTG
CTCCACGAACGGTGCCAAGTCAGCCGATCCCAAGGTGTGTGGCACCTATT
ATGTGTGCACGAACGGCAAAATGTGGCCACCTACTGCCCCACTGGCGACT
ACTACGACGACAGTTTAGGGTACTGTGTGTCCCGCCAGGTCGCCACTCCG
GTGGCGGGATGCAATCGATGCCAGTATGCTACGTCGACGTTTGTAAACGC
CGTCGATTCGAATACCTGCTCCACTACTACTATTGCACAGCCAGGGCGAG
GCCACTTTGAACACCTGCCCGGCCGATACATTCTTCGATGAGTCACGTTC
AGGGATGCAAGTCGACGACGACTTGTTCCCATTGTTGCCATTGAACGGAG
CCTGCAAGGATCACCGCCGAAGGATCAAAGAAACCGATAATAGTACGATC
GATGCCGAAGCAAGCTTTCTGAACATTCGTTGGGCGCCGCCGACCAGTAA
TTCCTAATCTAATCCTAAATCATATTCTATATCCCACTATGACATAGAGA
GATCTCGGTCTAGTGACATGGGGCCTGT
FMO02035.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7298-RA | 1323 | CG7298-RA | 86..1192 | 9..1109 | 5205 | 98.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:27:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 20202913..20203506 | 606..13 | 2970 | 100 | Minus |
| 3L | 28110227 | 3L | 20202201..20202710 | 1109..606 | 2025 | 96.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:27:08 has no hits.
FMO02035.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:11 Download gff for
FMO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 85..1196 | 9..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:16 Download gff for
FMO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 86..1197 | 9..1115 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:17 Download gff for
FMO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7298-RA | 86..1197 | 9..1115 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:17 Download gff for
FMO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 20202201..20202710 | 606..1109 | 96 | <- | Minus |
| 3L | 20202914..20203508 | 10..605 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:16 Download gff for
FMO02035.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 20195301..20195810 | 606..1109 | 96 | <- | Minus |
| arm_3L | 20196014..20196608 | 10..605 | 99 | | Minus |
