FMO02038.5prime Sequence
560 bp (560 high quality bases) assembled on 2008-05-06
> FMO02038.5prime
CAGTCGACATGTTCCCAGTGCTGCTGCTCCTTCTCTTCTTCTTCGCCAAG
GAAACCCACCAGATCAATGTGGACTGCAACGAGCTCCAGATGATGGGCCA
GTTCATGTGCCCCGACCCGGCGAGGGGTCAAATCGATCCCAAGACACAGC
AGCTGGCCGGATGCACCAGGGAGGGTCGCGCCCGCGTCTGGTGCATCGCC
GCCAACGAGATCAACTGCACGGAGACTGGCAATGCCACGTTCACCCGAGA
AGTGCCCTGCAAGTGGACGAATGGCTATCACCTGGACACCACACTGCTAC
TCTCTGTCTTTCTGGGCATGTTCGGCGTGGATAGATTCTATTTGGGCTAT
CCGGGCATCGGACTCCTCAAGTTCTGCACCCTCGGCGGCATGTTCCTGGG
CCAGCTGATTGACATCGTGCTGATAGCCCTGCAGGTTGTGGGTCCGGCGG
ATGGCTCCGCCTATGTGATACCCTACTACGGAGCCGGCATCCACATCGTG
CGCAGCGACAACACCACGTACCGGCTGCCCAGGGACGACTGGGCAAGCTT
TCTAGACCAT
FMO02038.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:46:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10795-RA | 1100 | CG10795-RA | 229..763 | 8..542 | 2675 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:46:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21383564..21383837 | 542..269 | 1370 | 100 | Minus |
| 2R | 25286936 | 2R | 21383902..21384163 | 269..8 | 1310 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:46:51 has no hits.
FMO02038.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:28 Download gff for
FMO02038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10795-RA | 175..721 | 1..550 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:57:05 Download gff for
FMO02038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10795-RA | 225..771 | 1..550 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:18:08 Download gff for
FMO02038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10795-RA | 225..771 | 1..550 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:18:08 Download gff for
FMO02038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21383903..21384167 | 1..268 | 98 | | Minus |
| 2R | 21383556..21383837 | 269..550 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:57:05 Download gff for
FMO02038.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17271061..17271342 | 269..550 | 98 | <- | Minus |
| arm_2R | 17271408..17271672 | 1..268 | 98 | | Minus |
