FMO02039.5prime Sequence
943 bp (943 high quality bases) assembled on 2008-05-06
> FMO02039.5prime
CAGTCGACATGACCGATCCAAACGTGCCAAGAGGAGCCCTAAGCTTGCAG
AATGTTCTGAAATATACGGTGCAACACCACGATCCAAATCCAGAAGCAGC
CCCAAAGTTGGAAACTCCCGATCCTGAGAGAGCTCAGTTTTTGGCAAATG
CCCTAAATGCCATGACAGTGGATGCTGCAGCGGCCCTGAAAGCAGCTTTG
GTGATCTTGAACAGCGAAGAATCCAGCACGGACGACCAAATCGAGAGTCT
GGATGTCATAAGGAGCCACATCGATGACATCGACAATGCCATAACGCTGG
TGAAGCTAGGAGGAACTGCAACTCTACTCCGCTACATAACACATTCGGAT
AGCGAAGTGCGAGAATCGGCACTCAATACTGTCGCTGAAGTGGCCCAGAA
TAATGTATTTTGTCAGAACGCCCTCATAAACGATAAGTTTTTGCCTGCAC
TTGCAAAGAACTTGAGCCATTCGAATCCGAATACCGTGCGGTGCTCCTTG
TATGCGATATCATCGCTGATAAGGAACTTTCAGCCTGGATACGACGAGTT
TAAGCGCATAAAGGGGATCAGGTCCTTGATACCCTGTCTGAAATCCACAA
ATACAAATGTCTACGTGAAGACTGCTTTTCTAATTGCATCGTTAACTTCA
ATCGAGAAGTCTGTCAGAGATGATTTTGTGAAGGAAGAAGTGTTTCCTGT
GCTAGTGGAAAACCTTAAGCCCGTTGATGACTTTGATATCAAACAAGAAA
CTACGCTTTTTGCACTTTCATCTCTTTCGCGGGGAATCGGAGTTAAAACT
CTCTACGGAAAAACGAGAGGAAATCCTATCGAAGCTTCAACAAATTATTT
CCAAAACAACAGTCGGAAACGTGTGAAGACATGGTTAATTATGCAAGAAA
TATTTTTGACAACTTAAGTGCACATGCAAGCTTTCTAGACCAT
FMO02039.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:07:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10973-RB | 1032 | CG10973-RB | 57..974 | 9..925 | 4520 | 99.7 | Plus |
| CG10984-RD | 2285 | CG10984-RD | 2180..2227 | 925..878 | 240 | 100 | Minus |
| CG10984-RB | 2321 | CG10984-RB | 2216..2263 | 925..878 | 240 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:07:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 12753676..12754218 | 669..127 | 2715 | 100 | Minus |
| 3L | 28110227 | 3L | 12753404..12753615 | 878..668 | 935 | 98.1 | Minus |
| 3L | 28110227 | 3L | 12754542..12754621 | 128..49 | 400 | 100 | Minus |
| 3L | 28110227 | 3L | 12753297..12753344 | 925..878 | 240 | 100 | Minus |
| 3L | 28110227 | 3L | 12754677..12754718 | 50..9 | 210 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:07:34 has no hits.
FMO02039.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:30 Download gff for
FMO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-RB | 11..931 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:41 Download gff for
FMO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-RB | 57..977 | 9..929 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:42:52 Download gff for
FMO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10973-RB | 57..977 | 9..929 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:42:52 Download gff for
FMO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 12753293..12753344 | 878..929 | 96 | <- | Minus |
| 3L | 12753405..12753613 | 670..877 | 98 | <- | Minus |
| 3L | 12753676..12754216 | 129..669 | 100 | <- | Minus |
| 3L | 12754542..12754619 | 51..128 | 100 | <- | Minus |
| 3L | 12754677..12754718 | 9..50 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:41 Download gff for
FMO02039.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 12746393..12746444 | 878..929 | 96 | <- | Minus |
| arm_3L | 12746505..12746713 | 670..877 | 98 | <- | Minus |
| arm_3L | 12747777..12747818 | 9..50 | 100 | | Minus |
| arm_3L | 12746776..12747316 | 129..669 | 100 | <- | Minus |
| arm_3L | 12747642..12747719 | 51..128 | 100 | <- | Minus |
