FMO02044.5prime Sequence
927 bp (927 high quality bases) assembled on 2008-05-06
> FMO02044.5prime
CAGTCGACATGAGTAATCTGGCGAGACGACCACTGCATGGTAACGAACCT
GGGGCTCTTTCCCAGTCAAAGGACGATGTGGACCAGGACCACTCCTACAA
TAGGCAGCCGGTACAAAGCTACGAGGAAGGGACATCTTCGGCCGACGAAC
TGGAAGAAAGTGAATCCCATGACGAACCCAGTATTCCCAAACCCACCGAT
CAGTCCAGAAGACGCAGTATTTCAACTTCTAGGCCGAGTTCAAGGCAGGA
GCAGCACAATTCTATCAATGAACATCACAACGGCATCGGTATTAAACTAG
CGCTTGCCGGTGTTCTATTTGGTTTATTGGTTGTCTATGGGTACGGATCC
AGCATTATAGAGGAGAAACAGTGTGACTTTAAGGATCTCAGGACAAAGTA
TCCCCAGCAGCAGGAAAAAGTATGGAGAGCCCTGCAAAAGGGGATCGAGG
GGCTGATTAACAAAAAGGACAAGCACCCCAGTGTATTTTTGTTCCTGCAC
CAGGATCCAAAGCTGGAGAAACTGATCGATGAAATTGCCATTGAGGCTTC
AATGTGCTTTGGTGGTCCCCGAAAGCTGATTCACATGAAGAAGGAGCACA
TGAAGGAATACGGTTTGGCGATTGAACAATTCAAATCAAAAATCAACGAT
GGAAAGGTTTTTTTAATAGTGAACCTAAATGAAATTGCGCCGAATGGAGC
TCGAGCCCTGCACACAATCTGCGATACCTACAGCCCTCTGGTGGAGGATG
CAGTCATCTTCCTCTCCCTTCGAACATTCAACACAACCGCCGTGAACAAC
TCCGTCAATCTAGCCACGGATACTCTGTACGATCTGTGGGACCAGGAGTT
GGGGGACCACGAGCTGGATCCTTTAATTACTCGAGTTACTGATCAGTGCT
CATTTGAGTGCAAGCTTTCTAGACCAT
FMO02044.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:22:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14103-RB | 1221 | CG14103-RB | 52..954 | 9..909 | 4465 | 99.8 | Plus |
| CG14103-RA | 1036 | CG14103-RA | 52..954 | 9..909 | 4465 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:22:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19804475..19805029 | 563..9 | 2775 | 100 | Minus |
| 3L | 28110227 | 3L | 19804020..19804232 | 896..684 | 1065 | 100 | Minus |
| 3L | 28110227 | 3L | 19804288..19804410 | 683..561 | 615 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:22:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| TART-B | 10654 | TART-B DM14101 10654bp Derived from U14101 (g603662) (Rel. 42, Last updated, Version 1). | 8307..8346 | 132..171 | 110 | 75 | Plus |
FMO02044.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:36 Download gff for
FMO02044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14103-RA | 41..949 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:38:33 Download gff for
FMO02044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14103-RA | 52..960 | 9..916 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:59:06 Download gff for
FMO02044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14103-RA | 52..960 | 9..916 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:59:06 Download gff for
FMO02044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19803999..19804232 | 684..916 | 97 | <- | Minus |
| 3L | 19804288..19804409 | 562..683 | 100 | <- | Minus |
| 3L | 19804477..19805029 | 9..561 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:38:33 Download gff for
FMO02044.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19797099..19797332 | 684..916 | 97 | <- | Minus |
| arm_3L | 19797388..19797509 | 562..683 | 100 | <- | Minus |
| arm_3L | 19797577..19798129 | 9..561 | 100 | | Minus |
