FMO02046.5prime Sequence
611 bp (611 high quality bases) assembled on 2008-05-06
> FMO02046.5prime
CAGTCGACATGAGCAACGGTGGTGGTGCCGGGGGATTGGGCGCAGCGCGT
CCACCTCCACGGATCGATGGAATGGTCTCGCTTAAGGTCGACAATCTCAC
ATATCGCACCACGCCGGAGGATCTGCGTCGGGTCTTCGAGCGGTGCGGCG
AGGTGGGGGACATCTACATACCCAGGGATCGCTACACACGTGAGAGCCGC
GGATTCGCATTTGTTCGCTTCTATGACAAACGTGATGCCGAGGACGCACT
GGAGGCCATGGATGGTCGCATGCTAGACGGCAGGGAGCTCCGCGTACAGA
TGGCCCGCTACGGACGCCCCTCTTCGCCCACTCGCAGCTCCAGTGGTCGT
CGTGGCGGAGGAGGAGGCGGTGGTTCCGGCGGGCGTCGTCGGTCACGTTC
TCGCTCCCCAATGCGCCGTCGTTCGCGCAGTCCGCGTCGCCGATCATACT
CCCGTTCCCGCTCGCCTGGTAGCCACTCGCCGGAACGCCGATCCAAATTT
TCACGCAGTCCAGTACGCGGCGACAGCCGCAATGGAATCGGAAGCGGATC
TGGAGGACTGGCCCCAGCCGCGTCTCGTAGTCGCAGTCGCTCCGCAAGCT
TTCTAGACCAT
FMO02046.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SC35-RD | 1880 | CG5442-RD | 127..711 | 9..593 | 2925 | 100 | Plus |
| SC35-RC | 1441 | CG5442-RC | 127..711 | 9..593 | 2925 | 100 | Plus |
| SC35-RB | 1077 | CG5442-RB | 127..711 | 9..593 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 12432348..12432732 | 593..209 | 1895 | 99.5 | Minus |
| 2L | 23513712 | 2L | 12433579..12433711 | 217..85 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 12433834..12433912 | 87..9 | 395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:58:22 has no hits.
FMO02046.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:25 Download gff for
FMO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5442-RB | 124..718 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:57:33 Download gff for
FMO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SC35-RB | 117..711 | 1..593 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:29 Download gff for
FMO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SC35-RB | 117..711 | 1..593 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:29 Download gff for
FMO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 12432348..12432723 | 218..593 | 100 | <- | Minus |
| 2L | 12433579..12433709 | 87..217 | 100 | <- | Minus |
| 2L | 12433835..12433917 | 1..86 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:57:33 Download gff for
FMO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 12432348..12432723 | 218..593 | 100 | <- | Minus |
| arm_2L | 12433579..12433709 | 87..217 | 100 | <- | Minus |
| arm_2L | 12433835..12433917 | 1..86 | 95 | | Minus |
