FMO02047.5prime Sequence
752 bp (752 high quality bases) assembled on 2008-05-06
> FMO02047.5prime
CAGTCGACATGCCCCGAAAGAAGTCCGAGGATTTTTACAGAACCCACGGA
TTTACCGCCAATTTGGAGAATGGCAAATACTCGGCCACCTGTCACTTCTG
CGAAAAAGTACTCCAAAATACGGCGCTATCCCGGCTATCGTTACACAGGC
AAACCTGCGATGCCCGGCGAAGTAGAAGCGCTGTAGTGTACACTTCTGCC
GACGAGAAGGATCATGACGAGGCTCCTAGGATAAAGATCCAGAAGATTTC
GGGCGACGATGATGGCGGCCTGGATAATGCCAACGAAGGCAAGGAGATCA
TTGTTAAGATACAACAAATTCTGGACGATGCTGACGAGGCTGAGGCGCCC
AAGGAGCAACCCAGAGTGAAACGAGAAATTCGCAAAAGGAAACTGACCAA
AACGGAAGAGTCTGGCGAGCAAAATTTGGAATTTGAAATTTCCAACGTTG
AAATTAAAAATCCCGAATACTCTGAGTACCTGGACGAAAGCAAAGAACAT
TACATATTGCAGCAAAACCCGGATGACTTAGCCAATGGATCGGCGACGAT
CATCGAGGCCAGGCCAAGAAATGGTTTAGCTGCATTGCGAGCGGAAAAGG
CGCGAGCCGAGATCAGTCAGTTCCAGAGTAAGACCAAGTTTCTTAAAACG
GAAACGGACAATCTAAAAGTAGAGCGCACACTGACTTTGCTTAAGATTCA
GAAGCTTCGATTGGAAATCGACGCCCTACGCGATGCAAGCTTTCTAGACC
AT
FMO02047.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:21:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ibf1-RA | 963 | CG8436-RA | 85..810 | 9..734 | 3630 | 100 | Plus |
| Ibf1-RB | 948 | CG8436-RB | 85..795 | 9..734 | 3395 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:21:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 9260011..9260247 | 498..734 | 1185 | 100 | Plus |
| 3R | 32079331 | 3R | 9259766..9259956 | 307..497 | 955 | 100 | Plus |
| 3R | 32079331 | 3R | 9259048..9259188 | 9..149 | 705 | 100 | Plus |
| 3R | 32079331 | 3R | 9259252..9259341 | 147..236 | 450 | 100 | Plus |
| 3R | 32079331 | 3R | 9259630..9259703 | 235..308 | 370 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:21:31 has no hits.
FMO02047.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:26 Download gff for
FMO02047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8436-RA | 80..808 | 9..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:56:13 Download gff for
FMO02047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8436-RA | 85..813 | 9..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:12:08 Download gff for
FMO02047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ibf1-RA | 85..813 | 9..738 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:12:08 Download gff for
FMO02047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 9259048..9259187 | 9..148 | 100 | -> | Plus |
| 3R | 9259254..9259341 | 149..236 | 100 | -> | Plus |
| 3R | 9259632..9259703 | 237..308 | 100 | -> | Plus |
| 3R | 9259768..9259956 | 309..497 | 100 | -> | Plus |
| 3R | 9260011..9260250 | 498..738 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:56:13 Download gff for
FMO02047.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 5085354..5085425 | 237..308 | 100 | -> | Plus |
| arm_3R | 5084770..5084909 | 9..148 | 100 | -> | Plus |
| arm_3R | 5084976..5085063 | 149..236 | 100 | -> | Plus |
| arm_3R | 5085490..5085678 | 309..497 | 100 | -> | Plus |
| arm_3R | 5085733..5085972 | 498..738 | 99 | | Plus |
