FMO02048.5prime Sequence
680 bp (680 high quality bases) assembled on 2008-05-06
> FMO02048.5prime
CAGTCGACATGTCGCTTTTAGGTAGGATTGCAGAGAAAACTTCAAGGCTC
AGCTGCCTTCGATTGATGTCGGTGTATCCCACACACTATGTCGAACCAAT
TGTACAAAAATATAAACAACTAGAGCAAAAGAATGATCTGTCCAAGCTTT
ACCATGTGCCCATCAAGGCGGCGGTCAACAAATCGTCTGATACCATCTTT
CACGACGATACAAAACATAAAATGATCAATTATATAACGAAAAAGGGGAA
CAGTGCCTTGGCCAGAACGCTTTTGTCCAAGACGCTGGAGCTAATAAAAC
GAACCCAGACGGAGCACATGAATCTGGCCAAAGGGGAGAAGACAACCATA
AACACCAATCCCGAAACGCTTCTGAAACAAGCGGTTGAAAACTGCCGACC
GCTCCTTCAAGTGACCGCCATAAAACGTGGTGGTGTCACCTATCAAGTCC
CTGTTCCCATCACCACGAAGCGGTCATATTTTCTGGCCATGAAGTGGCTC
TTGGAAGCTGCCCGCGAGAAGGAGCGTAAGGTGTCCCTGCCGGAAAAGTT
GGCCTGGGAGATTCTCGACGCAGCCCATGGCCAGGGAAGGGTCATCAAGC
GAAAGGACGATCTGCACAGGCTGTGCGAAAGCAACCGCGCCTACGCACAT
TACCGATGGAGCGCAAGCTTTCTAGACCAT
FMO02048.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpS7-RB | 917 | CG5108-RB | 81..736 | 7..662 | 3280 | 100 | Plus |
| mRpS7-RA | 789 | CG5108-RA | 81..736 | 7..662 | 3280 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 10386860..10387471 | 51..662 | 3060 | 100 | Plus |
| 2L | 23513712 | 2L | 10386742..10386787 | 7..52 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:18:40 has no hits.
FMO02048.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 18:05:27 Download gff for
FMO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5108-RA | 71..737 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:46:56 Download gff for
FMO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS7-RA | 73..739 | 1..666 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:01:39 Download gff for
FMO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpS7-RA | 73..739 | 1..666 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:01:39 Download gff for
FMO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 10386734..10386787 | 1..52 | 92 | -> | Plus |
| 2L | 10386862..10387474 | 53..666 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:46:56 Download gff for
FMO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 10386734..10386787 | 1..52 | 92 | -> | Plus |
| arm_2L | 10386862..10387474 | 53..666 | 99 | | Plus |
